Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014170.1 Corchorus olitorius cultivar O-4 contig14203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1871
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34


Found at i:1573 original size:33 final size:33

Alignment explanation


    Indices: 1517--1593  Score: 93
    Period size: 33  Copynumber: 2.4  Consensus size: 33

       1507 AATTCCTTCA

                *       **    *      *       
       1517 GCTGGCTTGGATTGATCATCTCACTGACATTTT
          1 GCTGACTTGGATCAATCAACTCACTAACATTTT

                                        *    
       1550 GCTGACTTGGATCAATCAACTCACTAACCTTTT
          1 GCTGACTTGGATCAATCAACTCACTAACATTTT

                        
       1583 GCTGA-TTGGAT
          1 GCTGACTTGGAT

       1594 GCTGTGATAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 1
        0.84            0.13        0.02

Matches are distributed among these distances:
  32    6  0.16
  33   32  0.84

ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36


Consensus pattern (33 bp):   
GCTGACTTGGATCAATCAACTCACTAACATTTT
Done.