Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014171.1 Corchorus olitorius cultivar O-4 contig14204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65337

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
365--419
16
3.2
17
78
14
60
9
21
20
49
1.76
4073--4120
25
1.9
25
95
0
87
39
10
18
31
1.85
4554--4828
50
5.5
50
90
2
437
28
13
27
30
1.94
6431--6498
6
10.7
6
87
3
64
14
0
10
75
1.06
6430--6511
14
6.2
13
80
9
60
13
0
10
75
1.04
6437--6499
7
9.6
7
89
8
89
14
0
11
74
1.07
6900--6945
11
4.6
10
82
15
51
15
15
2
67
1.33
6901--6941
12
3.7
11
87
9
57
14
17
2
65
1.37
6888--6952
8
8.4
8
75
23
52
13
12
1
72
1.20
10622--11196
40
14.4
40
86
3
656
32
19
28
20
1.96
10622--11203
120
4.8
120
85
1
727
31
18
28
20
1.97
16813--16848
19
1.9
18
88
5
54
38
8
22
30
1.83
17917--17991
23
3.2
24
63
14
66
50
5
14
29
1.65
17899--18007
46
2.4
46
100
0
218
45
11
18
24
1.81
23865--24233
54
6.8
54
90
1
544
28
17
21
31
1.96
24209--24259
26
2.0
26
88
0
75
19
19
27
33
1.96
24081--24415
181
1.9
180
86
4
487
25
16
24
33
1.96
24262--24452
54
3.5
54
89
2
278
25
16
24
34
1.95
23973--24519
289
1.9
289
82
8
704
26
17
23
32
1.96
26030--26147
19
6.4
19
69
16
52
25
8
0
65
1.26
26031--26155
46
2.7
46
87
2
180
24
8
0
66
1.25
26066--26148
27
3.4
27
67
27
76
27
7
1
63
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26029--26121
8
11.6
8
73
19
52
24
9
0
65
1.22
26184--26236
8
6.6
8
80
0
52
22
13
0
64
1.28
26157--26223
24
2.8
24
86
4
82
23
20
1
53
1.54
37028--37146
42
2.9
42
87
3
152
26
21
10
41
1.85
38283--38333
15
3.5
14
82
12
50
39
7
15
37
1.77
40560--40773
67
3.2
67
91
2
297
37
14
23
24
1.92
40763--40951
64
3.0
64
91
0
297
37
16
20
25
1.93
40901--41001
50
2.0
50
92
0
166
37
17
17
26
1.93
40951--41363
64
6.5
64
90
1
630
36
16
21
25
1.94
40781--41321
178
3.0
178
87
8
789
36
16
20
26
1.93
41432--41598
50
3.3
50
90
1
255
37
10
26
25
1.88
41432--41624
100
1.9
101
86
1
271
35
10
26
26
1.90
42643--42832
102
1.8
102
82
8
242
29
6
30
33
1.82
45009--45056
25
1.9
25
83
8
62
52
6
29
12
1.63
57537--57602
24
2.7
24
84
11
89
57
3
0
39
1.14
57520--57647
67
1.9
67
88
4
197
53
3
2
41
1.29
59844--59876
14
2.3
15
89
5
50
3
9
15
72
1.21
63575--63607
17
1.9
17
88
11
50
9
9
0
81
0.87

Tables:   1

The End!