Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014172.1 Corchorus olitorius cultivar O-4 contig14205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42362

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1182--1294
21
5.4
21
91
2
158
26
26
18
28
1.98
2052--2183
29
4.6
28
87
8
178
37
25
17
19
1.93
11126--11313
54
3.5
54
76
7
193
24
14
22
37
1.92
11341--11815
54
8.8
54
80
4
467
26
17
21
34
1.96
11304--11672
162
2.3
162
82
2
420
25
18
21
34
1.96
16328--16368
21
2.0
21
95
0
73
46
19
24
9
1.80
18161--18197
19
1.9
19
94
0
65
37
5
29
27
1.79
26329--26673
190
1.8
191
96
0
647
31
20
11
36
1.88
27120--27160
21
2.0
21
90
0
64
34
7
26
31
1.84
32589--32631
22
2.0
22
85
0
59
53
4
16
25
1.62
32729--32804
28
2.8
27
90
6
109
43
25
17
14
1.86
33308--34337
150
6.8
149
84
5
1186
47
17
14
20
1.82
33308--34337
30
34.2
30
82
3
1050
47
17
14
20
1.82
34622--34738
61
1.9
62
84
5
157
39
19
17
23
1.92
34678--34928
36
7.0
36
84
2
308
42
17
17
21
1.89
34761--34967
72
2.9
72
82
5
186
41
19
19
19
1.91
34678--34967
108
2.7
107
81
2
269
43
18
18
20
1.89
36155--36194
21
1.9
21
89
0
62
10
27
0
62
1.27
39502--39532
16
1.9
16
93
0
53
22
12
25
38
1.90

Tables:   1

The End!