Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014177.1 Corchorus olitorius cultivar O-4 contig14210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45488

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3460--3494
3
11.7
3
93
0
61
0
28
0
71
0.86
16673--16703
6
5.2
6
100
0
62
48
0
16
35
1.46
17132--17182
25
2.0
25
85
7
68
33
1
0
64
1.05
17296--17341
22
2.1
22
95
0
83
52
6
0
41
1.27
18316--18358
3
14.3
3
100
0
86
32
0
0
67
0.91
19646--19692
21
2.2
21
85
7
60
40
8
23
27
1.83
19646--19753
22
5.0
21
76
8
67
37
9
17
35
1.82
19692--19813
22
5.5
22
74
9
106
38
9
12
40
1.74
19673--19774
44
2.3
45
81
6
118
38
10
12
38
1.79
19692--19813
44
2.8
42
78
9
120
38
9
12
40
1.74
25477--25518
21
2.0
21
95
0
75
35
26
19
19
1.95
27331--27468
33
4.2
33
81
5
129
43
21
7
27
1.80
29876--29917
21
2.0
21
95
0
75
33
26
19
21
1.97
37368--37530
60
2.7
60
90
1
256
35
19
19
26
1.95
37364--37532
31
5.6
31
65
19
97
34
18
18
27
1.95
37488--37549
31
2.1
29
85
8
81
38
20
19
20
1.93
37573--37737
31
5.5
29
70
16
122
30
18
15
35
1.92
37604--37701
29
3.3
28
71
18
83
34
20
11
33
1.88
37569--37734
60
2.8
60
89
3
255
30
18
15
35
1.92
37844--37886
21
2.0
21
100
0
86
27
23
23
25
2.00
37928--38193
131
2.0
131
96
0
487
30
11
14
43
1.80
39282--39311
15
1.9
16
93
6
53
66
0
0
33
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41677--41741
2
33.0
2
84
3
60
40
0
10
49
1.38
41689--41741
20
2.6
21
88
8
74
37
0
13
49
1.42
41677--41741
22
3.0
22
81
2
78
40
0
10
49
1.38
41683--41741
24
2.5
24
86
2
84
38
0
11
49
1.40
42860--42890
11
2.8
11
100
0
62
64
0
35
0
0.94
43133--43160
2
14.0
2
100
0
56
50
0
0
50
1.00
43703--43744
22
1.9
22
85
0
57
42
26
16
14
1.86
44211--44303
44
2.2
43
83
9
111
39
20
6
33
1.78

Tables:   1

The End!