Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014178.1 Corchorus olitorius cultivar O-4 contig14211, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4537
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33


Found at i:523 original size:26 final size:27

Alignment explanation


    Indices: 494--548  Score: 85
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        484 ATAGCACCCT

                               *       
        494 TTTACT-AATCAAGGGTAATATAGTAA
          1 TTTACTCAATCAAGGGTAAAATAGTAA

                    *                  
        520 TTTACTCACTCAAGGGTAAAATAGTAA
          1 TTTACTCAATCAAGGGTAAAATAGTAA

              
        547 TT
          1 TT

        549 CATGCTCCTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  26    6  0.23
  27   20  0.77

ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35


Consensus pattern (27 bp):   
TTTACTCAATCAAGGGTAAAATAGTAA

Done.