Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014183.1 Corchorus olitorius cultivar O-4 contig14216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92014
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:283 original size:154 final size:154
Alignment explanation
Indices: 3--2255 Score: 3839
Period size: 154 Copynumber: 14.6 Consensus size: 154
1 TG
3 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* *
68 TAGTTAGGCCACAAACAATGGAAAGAAAAGCATTGAGGATTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
*
133 GGAACTAATGGGCCCCAATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
*
157 CAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
222 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
287 GGAACTAATGGGCCCCGATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
* *
311 CAAAATAACAAGTGTTCCAAATGTGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
376 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAATCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
441 GGAACTAATGGGCCCCGATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
*
465 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCATAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * *
530 TAGTTAGGTCATAAACAATGGAAAGAAAAGCATTTAGGGTTGCCAAATCGAAGACGAATCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
*
595 GGAACTAATGGGCCCCAATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
* * *
619 CAAAATAACAAGTGTTCCAAATGAGGTAAAAACTTCACGGTGGACTAATCTCAACAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * * *
684 TAGTTAGGACATAAATAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAGGCGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* *
748 GGAACTAATGGGCCCCAATACGCC
131 GGAACTAATGGGCCCCGATAGGCC
*
772 CAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * *
837 TAGTTAGGCCATAAACATTGTAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAATCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
902 GGAACTAATGGGCCCCGATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
* * *
926 CAAAATAACAAGTGTTCCAAATTAGCTAAAAACTTGACAGTGGACTAATCTCACCAAAATGTTTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
991 TAGTTAGGCCGTAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* *
1056 GGAACTGATGGGCCCCGATAGGCT
131 GGAACTAATGGGCCCCGATAGGCC
1080 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* *
1145 TAGTTAGGCCATAAACATTGGAAAGAAAGGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
**
1210 GGAACTAAT-GGCCCCGATATTCC
131 GGAACTAATGGGCCCCGATAGGCC
* *
1233 CAAAATAACAAGTGTTCCAAATGATCTAAAAACTTCATAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
1298 TAGTTAGGCCATAAATAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
1363 GGAACTAATGGGCCCCGATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
*
1387 CAAAATAACAAGTATTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
**
1452 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAACGTAATAACTTTC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAA-G--ACGA--TTC
* *
1517 AAAACGGAACTAATGGGACCCAATAGGCC
126 AAAACGGAACTAATGGGCCCCGATAGGCC
*
1546 AAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
1611 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* *
1675 AGAACCAATGGGCCCCGATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
1699 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1764 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGGAGGGTTGCCAAATCGAAGACGATTCAAAA
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATT-GAGGGTTGCCAAATCGAAGACGATTCAAAA
1829 CGGAACTAATGGGCCCCGATAGGCC
130 CGGAACTAATGGGCCCCGATAGGCC
* *
1854 TAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTGACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * *
1919 TAGTTAGGCCGTAAACAATGGAAAGAAAAGCATTTAGGGTTGCCAAATCGAAGACGAATCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
*
1984 GGAACTAATGGGCCCCAATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
* * * *
2008 CAAAATAACAAGTGTTCCAAATGAGATAAAAACTTTAGAGTGCACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * * *
2073 TAGTTAAGCCATAAACAATGGAAAGAAAAGCATTGA-TGTTTCCAAATCGAAGGCGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
*
2137 GGAACTAATGGGCCCCAATAGGCC
131 GGAACTAATGGGCCCCGATAGGCC
*
2161 CAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* *
2226 TAGTTAGGCAATAAACATTGGAAAGAAAAG
66 TAGTTAGGCCATAAACAATGGAAAGAAAAG
2256 TAGTTACCTT
Statistics
Matches: 1980, Mismatches: 110, Indels: 19
0.94 0.05 0.01
Matches are distributed among these distances:
153 547 0.28
154 1139 0.58
155 148 0.07
157 3 0.00
158 14 0.01
159 129 0.07
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (154 bp):
CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
GGAACTAATGGGCCCCGATAGGCC
Found at i:1186 original size:615 final size:616
Alignment explanation
Indices: 3--2255 Score: 3848
Period size: 615 Copynumber: 3.7 Consensus size: 616
1 TG
3 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* *
68 TAGTTAGGCCACAAACAATGGAAAGAAAAGCATTGAGGATTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
*
133 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGT
131 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
198 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
196 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* *
263 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTC
261 GCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTC
* *
328 CAAATGTGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
326 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
*
393 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCG
391 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCG
*
458 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCATAGTGGACTAATCTCACCAAA
456 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
* * *
523 ATGATTATAGTTAGGTCATAAACAATGGAAAGAAAAGCATTTAGGGTTGCCAAATCGAAGACGAA
521 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAT
*
588 TCAAAACGGAACTAATGGGCCCCAATAGGCC
586 TCAAAACGGAACTAATGGGCCCCGATAGGCC
* * *
619 CAAAATAACAAGTGTTCCAAATGAGGTAAAAACTTCACGGTGGACTAATCTCAACAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * * *
684 TAGTTAGGACATAAATAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAGGCGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* *
748 GGAACTAATGGGCCCCAATACGCCCAAAATAACAAGTGTTCCAAATGAGCTAAATACTTCACAGT
131 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
* *
813 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACATTGTAAAGAAAAGCATTGAGGGTT
196 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
*
878 GCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTC
261 GCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTC
* * * *
943 CAAATTAGCTAAAAACTTGACAGTGGACTAATCTCACCAAAATGTTTATAGTTAGGCCGTAAACA
326 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
*
1008 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTGATGGGCCCCG
391 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCG
*
1073 ATAGGCTCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
456 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
* *
1138 ATGATTATAGTTAGGCCATAAACATTGGAAAGAAAGGCATTGAGGGTTGCCAAATCGAAGACGAT
521 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAT
**
1203 TCAAAACGGAACTAAT-GGCCCCGATATTCC
586 TCAAAACGGAACTAATGGGCCCCGATAGGCC
* *
1233 CAAAATAACAAGTGTTCCAAATGATCTAAAAACTTCATAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
1298 TAGTTAGGCCATAAATAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* *
1363 GGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTATTCCAAATGAGCTAAAAACTTCACAGT
131 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
1428 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
196 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
** * *
1493 GCCAAATCGAACGTAATAACTTTCAAAACGGAACTAATGGGACCCAATAGGCCAAAAATAACAAG
261 GCCAAATCGAA-G-ACGAA---TCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAG
1558 TGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT
321 TGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT
* * *
1623 AAACAATGGAAAGAAAAGCATTGA-GGTTTCCAAATCGAAGACGATTCAAAACAGAACCAATGGG
386 AAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGG
1687 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA
451 CCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCA
1752 CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGGAGGGTTGCCAAATCGAA
516 CCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATT-GAGGGTTGCCAAATCGAA
1817 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCC
580 GACGATTCAAAACGGAACTAATGGGCCCCGATAGGCC
* *
1854 TAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTGACAGTGGACTAATCTCACCAAAATGATTA
1 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
* * *
1919 TAGTTAGGCCGTAAACAATGGAAAGAAAAGCATTTAGGGTTGCCAAATCGAAGACGAATCAAAAC
66 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* * *
1984 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGATAAAAACTTTAGAGT
131 GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
* * *
2049 GCACTAATCTCACCAAAATGATTATAGTTAAGCCATAAACAATGGAAAGAAAAGCATTGA-TGTT
196 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* * *
2113 TCCAAATCGAAGGCGATTCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTC
261 GCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTC
* *
2178 CAAATGAGCTAAATACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCAATAAACA
326 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
*
2243 TTGGAAAGAAAAG
391 ATGGAAAGAAAAG
2256 TAGTTACCTT
Statistics
Matches: 1540, Mismatches: 89, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
614 106 0.07
615 759 0.49
616 96 0.06
617 3 0.00
618 1 0.00
619 145 0.09
620 178 0.12
621 252 0.16
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (616 bp):
CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
GGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
GCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCCAATAGGCCCAAAATAACAAGTGTTC
CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCG
ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAA
ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGAT
TCAAAACGGAACTAATGGGCCCCGATAGGCC
Found at i:3166 original size:52 final size:53
Alignment explanation
Indices: 3091--3192 Score: 170
Period size: 52 Copynumber: 1.9 Consensus size: 53
3081 CCATTTCCCT
* *
3091 ACAACATTAAGAGAGCAGAGAATTCC-AAACAAATGGTCGGATAATGCAGACA
1 ACAACATAAAGAGAGCACAGAATTCCAAAACAAATGGTCGGATAATGCAGACA
*
3143 ACAACATAAAGAGAGCACAGAATTCCAAAACAAATGGTTGGATAATGCAG
1 ACAACATAAAGAGAGCACAGAATTCCAAAACAAATGGTCGGATAATGCAG
3193 GCAGCTAACC
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 24 0.52
53 22 0.48
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.16
Consensus pattern (53 bp):
ACAACATAAAGAGAGCACAGAATTCCAAAACAAATGGTCGGATAATGCAGACA
Found at i:4960 original size:28 final size:29
Alignment explanation
Indices: 4916--4991 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
4906 TGTCAAAGGA
4916 GAGA-AAAAAAATGACATGAAGCCT-AAG
1 GAGACAAAAAAATGACATGAAGCCTCAAG
4943 GAGACAAAAAAATGACATGAAGCCTCAAG
1 GAGACAAAAAAATGACATGAAGCCTCAAG
*
4972 GAGACAAAAAAATAACATGA
1 GAGACAAAAAAATGACATGA
4992 CATGAAACTC
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 4 0.09
28 20 0.43
29 22 0.48
ACGTcount: A:0.57, C:0.13, G:0.20, T:0.11
Consensus pattern (29 bp):
GAGACAAAAAAATGACATGAAGCCTCAAG
Found at i:5134 original size:13 final size:13
Alignment explanation
Indices: 5116--5140 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5106 CTAACATGTT
5116 ATCCAAAGTGAAC
1 ATCCAAAGTGAAC
5129 ATCCAAAGTGAA
1 ATCCAAAGTGAA
5141 GGGTAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (13 bp):
ATCCAAAGTGAAC
Found at i:5200 original size:31 final size:32
Alignment explanation
Indices: 5153--5216 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
5143 GTAAAAAAGA
* *
5153 ATTGGAATGCCCAAATTATCCTCAATGCTTAT
1 ATTGGAATGCCCAAATTACCCTCAAGGCTTAT
*
5185 ATTGG-ATGCCTAAATTACCCTCAAGGCTTAT
1 ATTGGAATGCCCAAATTACCCTCAAGGCTTAT
5216 A
1 A
5217 CGAAATAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (32 bp):
ATTGGAATGCCCAAATTACCCTCAAGGCTTAT
Found at i:6032 original size:25 final size:25
Alignment explanation
Indices: 6004--6056 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
5994 AATTACAAAT
6004 TATCCAAATGTAAGAAATATTAATA
1 TATCCAAATGTAAGAAATATTAATA
6029 TATCCAAATGTAAGAAATATTAATA
1 TATCCAAATGTAAGAAATATTAATA
6054 TAT
1 TAT
6057 AAGAAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.34
Consensus pattern (25 bp):
TATCCAAATGTAAGAAATATTAATA
Found at i:7317 original size:25 final size:25
Alignment explanation
Indices: 7285--7335 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7275 ATGAACACGT
7285 TGGCAAATTTTGTATTTGGGCAAGA
1 TGGCAAATTTTGTATTTGGGCAAGA
7310 TGGCAAATTTTGTATTTGGGCAAGA
1 TGGCAAATTTTGTATTTGGGCAAGA
7335 T
1 T
7336 TCCCATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.37
Consensus pattern (25 bp):
TGGCAAATTTTGTATTTGGGCAAGA
Found at i:7347 original size:25 final size:25
Alignment explanation
Indices: 7288--7345 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
7278 AACACGTTGG
**
7288 CAAATTTTGTATTTGGGCAAGATGG
1 CAAATTTTGTATTTGGGCAAGATCC
7313 CAAATTTTGTATTTGGGCAAGATTCC
1 CAAATTTTGTATTTGGGCAAGA-TCC
*
7339 CATATTT
1 CAAATTT
7346 GTTTTGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 22 0.76
26 7 0.24
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (25 bp):
CAAATTTTGTATTTGGGCAAGATCC
Found at i:11255 original size:33 final size:33
Alignment explanation
Indices: 11208--11274 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
11198 TATTGAAAAA
* *
11208 CAAAGCTAAAGGTAAAAGAAGAATTCTGACCTT
1 CAAACCTAAAGGTAAAAGAAGAAATCTGACCTT
*
11241 CAAACCTAAAGGTAAAAGAATAAATCTGACCTT
1 CAAACCTAAAGGTAAAAGAAGAAATCTGACCTT
11274 C
1 C
11275 CTCTTGATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (33 bp):
CAAACCTAAAGGTAAAAGAAGAAATCTGACCTT
Found at i:12727 original size:15 final size:15
Alignment explanation
Indices: 12707--12736 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12697 ATCAGGCTGC
*
12707 CACGATACACGATAT
1 CACGATACACAATAT
12722 CACGATACACAATAT
1 CACGATACACAATAT
12737 TTCAGTCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (15 bp):
CACGATACACAATAT
Found at i:15252 original size:19 final size:20
Alignment explanation
Indices: 15204--15264 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 20
15194 ATCGCTGCTC
15204 TAATAATCTCATCTGTACAG
1 TAATAATCTCATCTGTACAG
*
15224 TACATAATCTAATCTGTACAG
1 TA-ATAATCTCATCTGTACAG
*
15245 T-GTAATCTCATCTGTACAG
1 TAATAATCTCATCTGTACAG
15264 T
1 T
15265 TGCCAAACAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.46
20 2 0.05
21 18 0.49
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TAATAATCTCATCTGTACAG
Found at i:15999 original size:17 final size:18
Alignment explanation
Indices: 15979--16028 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
15969 CCTTTTACTC
* *
15979 TTTATTTACCGAATT-TT
1 TTTAATTACCAAATTCTT
15996 TTTAATTACCAAATTCTT
1 TTTAATTACCAAATTCTT
*
16014 TTTAATTGCCAAATT
1 TTTAATTACCAAATT
16029 AATCAATTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.30, C:0.14, G:0.04, T:0.52
Consensus pattern (18 bp):
TTTAATTACCAAATTCTT
Found at i:16026 original size:69 final size:71
Alignment explanation
Indices: 15947--16078 Score: 187
Period size: 69 Copynumber: 1.9 Consensus size: 71
15937 TTCACTTCCC
* * *
15947 TAATTACCAAATTAACCGATTTCCTTTTACTCTTTATTTACCGAA-T-TTTTTTAATTACCAAAT
1 TAATTACCAAATTAACCAATTTCCTTTTACTCTTTAATTACCAAATTCTTTTTTAATTACCAAAT
16010 TCTTTT
66 TCTTTT
* * * *
16016 TAATTGCCAAATTAATCAATTTGCTTTTACTCTTTAATTACCAAATTCTTTTTTAGTTACCAA
1 TAATTACCAAATTAACCAATTTCCTTTTACTCTTTAATTACCAAATTCTTTTTTAATTACCAA
16079 TTTTACTTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
69 39 0.72
70 1 0.02
71 14 0.26
ACGTcount: A:0.30, C:0.18, G:0.04, T:0.48
Consensus pattern (71 bp):
TAATTACCAAATTAACCAATTTCCTTTTACTCTTTAATTACCAAATTCTTTTTTAATTACCAAAT
TCTTTT
Found at i:16088 original size:19 final size:20
Alignment explanation
Indices: 16040--16089 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
16030 ATCAATTTGC
16040 TTTTACTCTTTAATTACCAAA
1 TTTTACT-TTTAATTACCAAA
*
16061 TTCTT--TTTTAGTTACC-AA
1 TT-TTACTTTTAATTACCAAA
16079 TTTTACTTTTA
1 TTTTACTTTTA
16090 CCCTTTACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
17 2 0.08
18 4 0.16
19 14 0.56
20 1 0.04
21 2 0.08
22 2 0.08
ACGTcount: A:0.26, C:0.16, G:0.02, T:0.56
Consensus pattern (20 bp):
TTTTACTTTTAATTACCAAA
Found at i:16290 original size:119 final size:122
Alignment explanation
Indices: 16157--16415 Score: 386
Period size: 119 Copynumber: 2.1 Consensus size: 122
16147 TGCTCTCTAA
16157 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACC-AAATTC-CTTTACTTTACCC
1 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTCTTTACTTT-CCC
* *
16220 GAATT-CTTTTTTAGTTACCTAATTTTACTTTTACCC-T-TTACCAAAATT-CTTTCACT
65 AAATTCCTTTTTTAATTACC-AATTTTACTTTTACCCTTATTACC-AAATTCCTTTCACT
* *
16276 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCA
1 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTCTTTACTTTCCCA
*
16341 AATTCCTTTTTTAATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACT
66 AATTCCTTTTTTAATTACCAATTTTACTTTTACCC-TT-ATTACCAAATTCCTTTCACT
16400 TTACCAAATTCTTTTT
1 TTACCAAATTCTTTTT
16416 ACTCTTTAAT
Statistics
Matches: 127, Mismatches: 5, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
119 44 0.35
120 28 0.22
121 21 0.17
122 1 0.01
123 5 0.04
124 28 0.22
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.51
Consensus pattern (122 bp):
TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTCTTTACTTTCCCA
AATTCCTTTTTTAATTACCAATTTTACTTTTACCCTTATTACCAAATTCCTTTCACT
Found at i:16350 original size:39 final size:37
Alignment explanation
Indices: 16157--16415 Score: 107
Period size: 39 Copynumber: 6.4 Consensus size: 37
16147 TGCTCTCTAA
*
16157 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACT
1 TTACCAAATTCTTTTTTAGTTACCAA-ATT-CTTTTACT
* * * *
16196 TTACCAAATTC--CTTTACTTTACCCGAATTCTTTTTTA-G
1 TTACCAAATTCTTTTTTA-GTTA-CCAAATTC--TTTTACT
* * *
16234 TTACCTAATT-TTACTTTTACCCTTTACCAAAATTCTTTCACT
1 TTACCAAATTCTT--TTTTA---GTTACC-AAATTCTTTTACT
*
16276 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACT
1 TTACCAAATTCTTTTTTAGTTACCAA-ATT-CTTTTACT
* * *
16315 TTACCAAAATTC-TTTTTACTTTGCCAAATTCCTTTTTTA-A
1 TTACC-AAATTCTTTTTTA-GTTACCAAATT-C--TTTTACT
* *
16355 TTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACT
1 TTACCAA-ATT-C-TTT----TTTAGTTACCAAATT-CTTTTACT
16400 TTACCAAATTCTTTTT
1 TTACCAAATTCTTTTT
16416 ACTCTTTAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 57
0.67 0.10 0.23
Matches are distributed among these distances:
37 7 0.04
38 23 0.14
39 42 0.25
40 19 0.11
41 19 0.11
42 14 0.08
43 15 0.09
44 7 0.04
45 7 0.04
46 11 0.07
47 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.51
Consensus pattern (37 bp):
TTACCAAATTCTTTTTTAGTTACCAAATTCTTTTACT
Found at i:16432 original size:25 final size:24
Alignment explanation
Indices: 16350--16440 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
16340 AAATTCCTTT
*
16350 TTTAATTACC-AATTTTACTTTTACCC
1 TTTAATTACCAAATTCT--TTTTA-CC
*
16376 TTTAATTACCAAATTCCTTTTA-C
1 TTTAATTACCAAATTCTTTTTACC
16399 --T--TTACCAAATTCTTTTTACTC
1 TTTAATTACCAAATTCTTTTTAC-C
16420 TTTAATTACCAAATTCTTTTT
1 TTTAATTACCAAATTCTTTTT
16441 TAGTTACCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
19 16 0.29
21 2 0.04
23 2 0.04
25 21 0.38
26 10 0.18
27 4 0.07
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTAATTACCAAATTCTTTTTACC
Found at i:16606 original size:416 final size:413
Alignment explanation
Indices: 16157--17119 Score: 1856
Period size: 416 Copynumber: 2.3 Consensus size: 413
16147 TGCTCTCTAA
16157 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
1 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
16222 ATTCTTTTTTAGTTACCTAATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTC
66 ATTCTTTTTTAGTTACC-AATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTC
16287 TTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCAAATTCCTTTTT
130 TTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCAAATTCC-TTTT
16352 TAATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACTTTACCAAATTCTTTTTA
194 TAATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACTTTACCAAATTCTTTTTA
16417 CTCTTTAATTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTGCTCTCTAATTTACCAAATTC
259 CTCTTTAATTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTGCTCTCTAA-TTACCAAATTC
16482 CTTTTTTAGTTACCAATTTACTTTTACTCTTTAATTTCCAAATTCTTTTTTAGTTACCAATTTTA
323 CTTTTTTAGTTACCAATTTACTTTTACTCTTTAATTTCCAAATTCTTTTTTAGTTACCAATTTTA
16547 CTTTTACTTTACCAAATTCCTTTACT
388 CTTTTACTTTACCAAATTCCTTTACT
16573 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
1 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
16638 ATTCTTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTC
66 ATTC-TTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTC
16703 TTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCAAATTCCTTTTT
130 TTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCAAATTCCTTTTT
16768 AATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACTTTACCAAATTCTTTTTAC
195 AATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACTTTACCAAATTCTTTTTAC
16833 TCTTTAATTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTGCTCTCTAATTACCAAATTCCT
260 TCTTTAATTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTGCTCTCTAATTACCAAATTCCT
16898 TTTTTAGTTACCAATTTACTTTTACTCTTTAATTTCCAAATTCTTTTTTAGTTACCAATTTTACT
325 TTTTTAGTTACCAATTTACTTTTACTCTTTAATTTCCAAATTCTTTTTTAGTTACCAATTTTACT
16963 TTTACTTTACCAAATTCCTTTACT
390 TTTACTTTACCAAATTCCTTTACT
*
16987 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTA-CCAA
1 TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
* *
17051 ATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTGCCAAAATTCTTTTACTTTACCAAATTCT
66 ATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTCT
17116 TTTT
131 TTTT
17120 ACTCTTTAAT
Statistics
Matches: 543, Mismatches: 3, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
412 63 0.12
413 7 0.01
414 162 0.30
415 122 0.22
416 176 0.32
417 13 0.02
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51
Consensus pattern (413 bp):
TTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTCCTTTACTTTACCCGA
ATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAAATTCTTTCACTTTACCAAATTCT
TTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATTCTTTTTACTTTGCCAAATTCCTTTTTA
ATTACCAATTTTACTTTTACCCTTTAATTACCAAATTCCTTTTACTTTACCAAATTCTTTTTACT
CTTTAATTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTGCTCTCTAATTACCAAATTCCTT
TTTTAGTTACCAATTTACTTTTACTCTTTAATTTCCAAATTCTTTTTTAGTTACCAATTTTACTT
TTACTTTACCAAATTCCTTTACT
Found at i:16709 original size:119 final size:118
Alignment explanation
Indices: 16508--16830 Score: 469
Period size: 119 Copynumber: 2.7 Consensus size: 118
16498 TTTACTTTTA
*
16508 CTCTTTAATTT-CCAAATTCTTTTTTAGTTACCAATTTTACTTTTA--CTTTACCAAATTCCTTT
1 CTCTTTACTTTCCCAAATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAATTCCTTT
16570 ACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACC-AAATT
66 ACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATT
*
16622 C-CTTTACTTTACCCGAATTCTTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAAATT-C
1 CTCTTTACTTT-CCCAAATTC-TTTTTTAGTTACCAATTTTACTTTTACCCTTTACC-AAATTCC
16685 TTTCACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATT
63 TTT-ACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATT
* * * *
16742 CTTTTTACTTTGCCAAATTCCTTTTTAATTACCAATTTTACTTTTACCCTTTAATTACCAAATTC
1 CTCTTTACTTTCCCAAATTCTTTTTTAGTTACCAATTTTACTTTTACCC--T--TTACCAAATTC
16807 CTTTTACTTTACCAAATTCTTTTT
62 C-TTTACTTTACCAAATTCTTTTT
16831 ACTCTTTAAT
Statistics
Matches: 187, Mismatches: 7, Indels: 21
0.87 0.03 0.10
Matches are distributed among these distances:
113 8 0.04
114 1 0.01
115 7 0.04
116 26 0.14
118 11 0.06
119 79 0.42
120 13 0.07
121 9 0.05
122 5 0.03
123 25 0.13
124 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.51
Consensus pattern (118 bp):
CTCTTTACTTTCCCAAATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTACCAAATTCCTTT
ACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAAATT
Found at i:16847 original size:25 final size:24
Alignment explanation
Indices: 16765--16855 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
16755 CAAATTCCTT
*
16765 TTTAATTACC-AATTTTACTTTTACCC
1 TTTAATTACCAAATTCT--TTTTA-CC
*
16791 TTTAATTACCAAATTCCTTTTA-C
1 TTTAATTACCAAATTCTTTTTACC
16814 --T--TTACCAAATTCTTTTTACTC
1 TTTAATTACCAAATTCTTTTTAC-C
16835 TTTAATTACCAAATTCTTTTT
1 TTTAATTACCAAATTCTTTTT
16856 TAGTTACCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
19 16 0.29
21 2 0.04
23 2 0.04
25 21 0.38
26 10 0.18
27 4 0.07
ACGTcount: A:0.27, C:0.21, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTAATTACCAAATTCTTTTTACC
Found at i:16994 original size:57 final size:57
Alignment explanation
Indices: 16924--17119 Score: 331
Period size: 57 Copynumber: 3.4 Consensus size: 57
16914 TACTTTTACT
*
16924 CTTTAATTT-CCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTC
1 CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTC
16980 CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTC
1 CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTC
*
17037 CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACCCTTTGCCAAAATTC
1 CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTA--CTTTACC-AAATTC
*
17097 TTTTACTTTACCAAATTCTTTTT
1 CTTTACTTTACCAAATTCTTTTT
17120 ACTCTTTAAT
Statistics
Matches: 133, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
56 8 0.06
57 91 0.68
59 6 0.05
60 28 0.21
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.52
Consensus pattern (57 bp):
CTTTACTTTACCAAATTCTTTTTTAGTTACCAATTTTACTTTTACTTTACCAAATTC
Found at i:17119 original size:19 final size:19
Alignment explanation
Indices: 16053--17122 Score: 251
Period size: 19 Copynumber: 52.0 Consensus size: 19
16043 TACTCTTTAA
*
16053 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
16072 TTACC-AATTTTACTTTTACCCT
1 TTACCAAATTCT--TTTTA--CT
*
16094 TTACCAAAATTC-TTTCACT
1 TTACC-AAATTCTTTTTACT
*
16113 TTACCAAATTCTTTTTA-A
1 TTACCAAATTCTTTTTACT
* *
16131 TTACCAATTTTACTTTTGCTCTCT
1 TTACCAA-ATT-CTTTT--T-ACT
*
16155 AATTACCAAATTCTTTTTTA-G
1 --TTACCAAATTC-TTTTTACT
*
16176 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
*
16196 TTACCAAATTC-CTTTACT
1 TTACCAAATTCTTTTTACT
* *
16214 TTACCCGAATTCTTTTTTA-G
1 TTA-CCAAATTC-TTTTTACT
* *
16234 TTACCTAATTTTACTTTTACCCT
1 TTACCAAATTCT--TTTTA--CT
*
16257 TTACCAAAATTC-TTTCACT
1 TTACC-AAATTCTTTTTACT
*
16276 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
16295 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
16315 TTACCAAAATTCTTTTTACT
1 TTACC-AAATTCTTTTTACT
* *
16335 TTGCCAAATTCCTTTTTTA-A
1 TTACCAAATT-C-TTTTTACT
*
16355 TTACC-AATTTTACTTTTACCCTTT
1 TTACCAAATTCT--TTTTA--C--T
*
16379 AATTACCAAATTCCTTTTACT
1 --TTACCAAATTCTTTTTACT
16400 TTACCAAATTCTTTTTACTCTTT
1 TTACCAAATTCTTTTTA--C--T
*
16423 AATTACCAAATTCTTTTTTA-G
1 --TTACCAAATTC-TTTTTACT
* *
16444 TTACCAATTTTACTTTTGCTCTCTAAT
1 TTACCAA-ATT-C--TT--T-T-TACT
*
16471 TTACCAAATTCCTTTTTTA-G
1 TTACCAAATT-C-TTTTTACT
*
16491 TTACCAATTTAC-TTTTACTCT
1 TTACCAAATT-CTTTTTA--CT
*
16512 TTAATTTCCAAATTCTTTTTTA-G
1 TT-A---CCAAATTC-TTTTTACT
*
16535 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
*
16555 TTACCAAATTC-CTTTACT
1 TTACCAAATTCTTTTTACT
*
16573 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
16592 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
*
16612 TTACCAAATTC-CTTTACT
1 TTACCAAATTCTTTTTACT
* *
16630 TTACCCGAATTCTTTTTTTA-G
1 TTA-CCAAATTC--TTTTTACT
*
16651 TTACC-AATTTTACTTTTACCCT
1 TTACCAAATTCT--TTTTA--CT
*
16673 TTACCAAAATTC-TTTCACT
1 TTACC-AAATTCTTTTTACT
*
16692 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
16711 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
16731 TTACCAAAATTCTTTTTACT
1 TTACC-AAATTCTTTTTACT
* *
16751 TTGCCAAATTCCTTTTTA-A
1 TTACCAAATT-CTTTTTACT
*
16770 TTACC-AATTTTACTTTTACCCTTT
1 TTACCAAATTCT--TTTTA--C--T
*
16794 AATTACCAAATTCCTTTTACT
1 --TTACCAAATTCTTTTTACT
16815 TTACCAAATTCTTTTTACTCTTT
1 TTACCAAATTCTTTTTA--C--T
*
16838 AATTACCAAATTCTTTTTTA-G
1 --TTACCAAATTC-TTTTTACT
* *
16859 TTACCAATTTTACTTTTGCTCTCT
1 TTACCAA-ATT-CTTTT--T-ACT
*
16883 AATTACCAAATTCCTTTTTTA-G
1 --TTACCAAATT-C-TTTTTACT
*
16905 TTACCAATTTAC-TTTTACTCT
1 TTACCAAATT-CTTTTTA--CT
*
16926 TTAATTTCCAAATTCTTTTTTA-G
1 TT-A---CCAAATTC-TTTTTACT
*
16949 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
*
16969 TTACCAAATTC-CTTTACT
1 TTACCAAATTCTTTTTACT
*
16987 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
17006 TTACC-AATTTTACTTTTACT
1 TTACCAAATTCT--TTTTACT
*
17026 TTACCAAATTC-CTTTACT
1 TTACCAAATTCTTTTTACT
*
17044 TTACCAAATTCTTTTTTA-G
1 TTACCAAATTC-TTTTTACT
*
17063 TTACC-AATTTTACTTTTACCCT
1 TTACCAAATTCT--TTTTA--CT
*
17085 TTGCCAAAATTC-TTTTACT
1 TTACC-AAATTCTTTTTACT
17104 TTACCAAATTCTTTTTACT
1 TTACCAAATTCTTTTTACT
17123 CTTTAATTAC
Statistics
Matches: 785, Mismatches: 109, Indels: 314
0.65 0.09 0.26
Matches are distributed among these distances:
17 12 0.02
18 151 0.19
19 227 0.29
20 132 0.17
21 62 0.08
22 38 0.05
23 15 0.02
24 21 0.03
25 57 0.07
26 55 0.07
27 15 0.02
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51
Consensus pattern (19 bp):
TTACCAAATTCTTTTTACT
Found at i:17134 original size:25 final size:25
Alignment explanation
Indices: 17104--17188 Score: 78
Period size: 25 Copynumber: 3.6 Consensus size: 25
17094 TTCTTTTACT
17104 TTACCAAATTCTTTTTACTCTTTAA
1 TTACCAAATTCTTTTTACTCTTTAA
*
17129 TTACCAAA------TTA-TTTTTAA
1 TTACCAAATTCTTTTTACTCTTTAA
*
17147 TTACC-AATTTTACTTTTACTCTTTAA
1 TTACCAAATTCT--TTTTACTCTTTAA
17173 TTACCAAATTCTTTTT
1 TTACCAAATTCTTTTT
17189 TAGTTACCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 20
0.67 0.04 0.29
Matches are distributed among these distances:
17 2 0.04
18 11 0.23
19 3 0.06
25 15 0.32
26 11 0.23
27 5 0.11
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (25 bp):
TTACCAAATTCTTTTTACTCTTTAA
Found at i:17209 original size:19 final size:19
Alignment explanation
Indices: 17117--17211 Score: 68
Period size: 19 Copynumber: 4.7 Consensus size: 19
17107 CCAAATTCTT
*
17117 TTTACTCTTTAATTACCAA
1 TTTACTTTTTAATTACCAA
*
17136 ATTA-TTTTTAATTACCAA
1 TTTACTTTTTAATTACCAA
17154 TTTTACTTTTACTCTTTAATTACCAA
1 -TTTAC---T--T-TTTAATTACCAA
* *
17180 ATT-CTTTTTTAGTTACCAA
1 TTTAC-TTTTTAATTACCAA
17199 TTTACTTTTTAAT
1 TTTACTTTTTAAT
17212 CTTTAATTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
18 13 0.22
19 26 0.43
20 2 0.03
22 2 0.03
23 1 0.02
24 1 0.02
25 3 0.05
26 12 0.20
ACGTcount: A:0.29, C:0.16, G:0.01, T:0.54
Consensus pattern (19 bp):
TTTACTTTTTAATTACCAA
Found at i:17245 original size:45 final size:44
Alignment explanation
Indices: 17044--17246 Score: 188
Period size: 44 Copynumber: 4.6 Consensus size: 44
17034 TTCCTTTACT
* *
17044 TTACCAAATTCTTTTTTAGTTACCAATTTTAC-TTTTAC-C-CT--
1 TTACCAAATTC-TTTTTAATTACCAA-TTTACTTTTTACTCTTTAA
* * *
17085 TTGCCAAAATTC-TTTTACTTTACCAAATT-CTTTTTACTCTTTAA
1 TTACC-AAATTCTTTTTA-ATTACCAATTTACTTTTTACTCTTTAA
*
17129 TTACCAAATTATTTTTAATTACCAATTTTAC-TTTTACTCTTTAA
1 TTACCAAATTCTTTTTAATTACCAA-TTTACTTTTTACTCTTTAA
* *
17173 TTACCAAATTCTTTTTTAGTTACCAATTTACTTTTTAATCTTTAA
1 TTACCAAATTC-TTTTTAATTACCAATTTACTTTTTACTCTTTAA
* * *
17218 TTATCAAATTCCTTTTAATTTCTCAATTT
1 TTACCAAATTCTTTTTAATTAC-CAATTT
17247 TCGATTACCA
Statistics
Matches: 134, Mismatches: 15, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
39 1 0.01
40 13 0.10
41 12 0.09
42 7 0.05
43 12 0.09
44 47 0.35
45 42 0.31
ACGTcount: A:0.28, C:0.18, G:0.01, T:0.52
Consensus pattern (44 bp):
TTACCAAATTCTTTTTAATTACCAATTTACTTTTTACTCTTTAA
Found at i:25189 original size:15 final size:15
Alignment explanation
Indices: 25169--25198 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25159 ATCAGGCTGC
*
25169 CACGATACACGATAT
1 CACGATACACAATAT
25184 CACGATACACAATAT
1 CACGATACACAATAT
25199 TTCAACCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (15 bp):
CACGATACACAATAT
Found at i:28814 original size:159 final size:159
Alignment explanation
Indices: 28578--28888 Score: 561
Period size: 159 Copynumber: 1.9 Consensus size: 159
28568 CAAAACAACA
*
28578 GAATTTAGTGCAACAAAGAAATAGACCATCGAAAAATTTTAGTCTGAATTTATAATGTAGAATTT
1 GAATTTAGTGCAACAAAGAAATAGACCATC-AAAAATATTAGTCTGAATTTATAATGTAGAATTT
*
28643 CATTTCATAAAAGCTACATAACGTTAATGGGACAATGAGGCATTATAATAAAATTGATTTAGTCA
65 CATATCATAAAAGCTACATAACGTTAATGGGACAATGAGGCATTATAATAAAATTGATTTAGTCA
28708 TGTATAATGTTAATTGGAATTAAAGCATAT
130 TGTATAATGTTAATTGGAATTAAAGCATAT
28738 GAATTTAGTGCAACAAAGAAATAGACCAT-AAAAATAATTAGTCTGAATTTATAATGTAGAATTT
1 GAATTTAGTGCAACAAAGAAATAGACCATCAAAAAT-ATTAGTCTGAATTTATAATGTAGAATTT
* *
28802 CATATCGTAAAAGCTACATAATGTTAATGGGACAATGAGGCATTATAATAAAATTGATTTAGTCA
65 CATATCATAAAAGCTACATAACGTTAATGGGACAATGAGGCATTATAATAAAATTGATTTAGTCA
28867 TGTATAATGTTAATTGGAATTA
130 TGTATAATGTTAATTGGAATTA
28889 TATGCTAACT
Statistics
Matches: 146, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
158 6 0.04
159 111 0.76
160 29 0.20
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (159 bp):
GAATTTAGTGCAACAAAGAAATAGACCATCAAAAATATTAGTCTGAATTTATAATGTAGAATTTC
ATATCATAAAAGCTACATAACGTTAATGGGACAATGAGGCATTATAATAAAATTGATTTAGTCAT
GTATAATGTTAATTGGAATTAAAGCATAT
Found at i:28874 original size:82 final size:81
Alignment explanation
Indices: 28628--28876 Score: 221
Period size: 82 Copynumber: 3.1 Consensus size: 81
28618 AGTCTGAATT
* *
28628 TATAATGTAGAATTTCATTTCATAAAAGCTACATAACGTTAATGGGACAATGAGGCATTATAATA
1 TATAATGTAGAATTTCATATC-TAAAAGCTACATAATGTTAATGGGACAATGAGGCATTATAATA
28693 AAATTGATTTAGTCATG
65 AAATTGATTTAGTCATG
* ** * * ** * * *
28710 TATAATGT-TAATTGGA-AT-T-AAAGC-ATATGAAT-TTAGTGCAACAA--A-GAAATAGACCA
1 TATAATGTAGAATTTCATATCTAAAAGCTACAT-AATGTTAATGGGACAATGAGGCATTATA--A
* * *
28766 TAAAAAT-AATTAGTCTGAATT
63 TAAAATTGATTTAGTC---ATG
28787 TATAATGTAGAATTTCATATCGTAAAAGCTACATAATGTTAATGGGACAATGAGGCATTATAATA
1 TATAATGTAGAATTTCATATC-TAAAAGCTACATAATGTTAATGGGACAATGAGGCATTATAATA
28852 AAATTGATTTAGTCATG
65 AAATTGATTTAGTCATG
28869 TATAATGT
1 TATAATGT
28877 TAATTGGAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 34
0.66 0.15 0.18
Matches are distributed among these distances:
73 5 0.04
74 8 0.07
75 7 0.06
76 12 0.10
77 17 0.14
78 6 0.05
79 2 0.02
80 1 0.01
81 6 0.05
82 26 0.21
83 12 0.10
84 7 0.06
85 8 0.07
86 5 0.04
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (81 bp):
TATAATGTAGAATTTCATATCTAAAAGCTACATAATGTTAATGGGACAATGAGGCATTATAATAA
AATTGATTTAGTCATG
Found at i:29017 original size:93 final size:93
Alignment explanation
Indices: 28908--29086 Score: 313
Period size: 93 Copynumber: 1.9 Consensus size: 93
28898 TAAGTAACTT
*
28908 TAATTGGAATTATTATTTGAATGTAATGTATATATAACGGTGAGGAATTATTAAAATGATAAAAA
1 TAATTGGAATTATTATTTGAATGTAATGTATATATAACGGTGAGGAATTATTAAAAGGATAAAAA
*
28973 GTATTAAAAACCCAATTGTAACTCACTC
66 GGATTAAAAACCCAATTGTAACTCACTC
*
29001 TAATTGGAATTATTATTTGAATGTAATGTATATATAACGGTGAGGAATTATTGAAAGGATAAAAA
1 TAATTGGAATTATTATTTGAATGTAATGTATATATAACGGTGAGGAATTATTAAAAGGATAAAAA
* *
29066 GGATTGAAGACCCAATTGTAA
66 GGATTAAAAACCCAATTGTAA
29087 ATTACTATAT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 81 1.00
ACGTcount: A:0.42, C:0.07, G:0.17, T:0.34
Consensus pattern (93 bp):
TAATTGGAATTATTATTTGAATGTAATGTATATATAACGGTGAGGAATTATTAAAAGGATAAAAA
GGATTAAAAACCCAATTGTAACTCACTC
Found at i:29893 original size:16 final size:15
Alignment explanation
Indices: 29855--29896 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
29845 ACAGAGATTG
*
29855 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
29870 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
29885 ACTAGAAAACAA
1 AC-AGAAAACAA
29897 AGCAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Found at i:30673 original size:11 final size:11
Alignment explanation
Indices: 30657--30682 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30647 CCTTTGCCTA
30657 AAAACTAGAAG
1 AAAACTAGAAG
30668 AAAACTAGAAG
1 AAAACTAGAAG
30679 AAAA
1 AAAA
30683 GAAATTATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08
Consensus pattern (11 bp):
AAAACTAGAAG
Found at i:32810 original size:14 final size:15
Alignment explanation
Indices: 32791--32820 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32781 CAATCAAAGC
32791 AATAAT-CAAGGAAA
1 AATAATGCAAGGAAA
32805 AATAATGCAAGGAAA
1 AATAATGCAAGGAAA
32820 A
1 A
32821 TTAAAAAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13
Consensus pattern (15 bp):
AATAATGCAAGGAAA
Found at i:33503 original size:9 final size:9
Alignment explanation
Indices: 33491--33515 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
33481 AGCGAGGGTA
33491 GCGCGGATG
1 GCGCGGATG
33500 GCGCGGATG
1 GCGCGGATG
33509 GCGCGGA
1 GCGCGGA
33516 GGAAGGCACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.56, T:0.08
Consensus pattern (9 bp):
GCGCGGATG
Found at i:36268 original size:20 final size:20
Alignment explanation
Indices: 36231--36269 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
36221 TACTATTATT
36231 TTTTGAATTTAATATTTTAC
1 TTTTGAATTTAATATTTTAC
*
36251 TTTT-AATTTCAATTTTTTA
1 TTTTGAATTT-AATATTTTA
36270 AATGTCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (20 bp):
TTTTGAATTTAATATTTTAC
Found at i:36463 original size:22 final size:22
Alignment explanation
Indices: 36435--36960 Score: 133
Period size: 22 Copynumber: 23.9 Consensus size: 22
36425 TGTCTCTGTG
36435 TGGTTATCAAAATTTCATAAGA
1 TGGTTATCAAAATTTCATAAGA
* * *
36457 TGGTTATTATAATTTCATGAGGA
1 TGGTTATCAAAATTTCAT-AAGA
*
36480 -GGTTATCAAAATTCCAT-AG-
1 TGGTTATCAAAATTTCATAAGA
* *
36499 TGTGCTTACCAAAATTTCATATGGA
1 TG-G-TTATCAAAATTTCATA-AGA
* *
36524 -AGTTATCAAAATTTCAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
* *
36545 TGGTTACCAAAATTTCATAGGA
1 TGGTTATCAAAATTTCATAAGA
* * *
36567 TCAGGTTATTAAAATTTCTTAGGA
1 T--GGTTATCAAAATTTCATAAGA
* ** *
36591 AGGTTATTGAAATTTCAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
*
36613 TGGTTATCACAATTTTC-T-AGAA
1 TGGTTATCA-AAATTTCATAAG-A
* *
36635 AGGTTATC-AAA-GT-AGT--G-
1 TGGTTATCAAAATTTCA-TAAGA
*
36652 TGGTTATCAAAATTTCATATGA
1 TGGTTATCAAAATTTCATAAGA
* *
36674 AGGTTATAAAAGTCTCAATTTCATAAGA
1 TGGTTAT-CAA-----AATTTCATAAGA
* * * *
36702 -AG-TACCAAAAATTGAT-AGA
1 TGGTTATCAAAATTTCATAAGA
* *
36721 AGGTTATC-AAATCTCAT-AGA
1 TGGTTATCAAAATTTCATAAGA
* * *
36741 GTGATTATCAAAACTTCAAAGAGA
1 -TGGTTATCAAAATTTCATA-AGA
* *
36765 TTGAATTATCAAAATTT-ATAGGA
1 -TG-GTTATCAAAATTTCATAAGA
***
36788 AAATTATCAAAATTTCATAATG-
1 TGGTTATCAAAATTTCATAA-GA
*
36810 TTGTTATCAAAATTTCA-AAGCGA
1 TGGTTATCAAAATTTCATAA--GA
* *
36833 -GGCTATCAAAATTACA-AA-A
1 TGGTTATCAAAATTTCATAAGA
36852 TGTGATTATCAAAATTTCAT-AGA
1 TG-G-TTATCAAAATTTCATAAGA
* * ** *
36875 GGGGTCAAAAAAATTTTATAGAGA
1 -TGGTTATCAAAATTTCATA-AGA
36899 -GGTTATCAAAATTTCATAAAGA
1 TGGTTATCAAAATTTCAT-AAGA
36921 -GGTTATC-AAATTTGCA-AA-A
1 TGGTTATCAAAATTT-CATAAGA
*
36940 TGTGATTACCAAAATTTCATA
1 TG-G-TTATCAAAATTTCATA
36961 TTGGTATTTC
Statistics
Matches: 369, Mismatches: 81, Indels: 107
0.66 0.15 0.19
Matches are distributed among these distances:
17 7 0.02
18 3 0.01
19 9 0.02
20 27 0.07
21 35 0.09
22 204 0.55
23 26 0.07
24 30 0.08
25 14 0.04
26 2 0.01
27 1 0.00
28 11 0.03
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (22 bp):
TGGTTATCAAAATTTCATAAGA
Found at i:36515 original size:44 final size:43
Alignment explanation
Indices: 36467--36566 Score: 155
Period size: 44 Copynumber: 2.3 Consensus size: 43
36457 TGGTTATTAT
*
36467 AATTTCATGAGGAGGTTATCAAAATTCCATAGTGTGCTTACCAA
1 AATTTCAT-AGGAAGTTATCAAAATTCCATAGTGTGCTTACCAA
* *
36511 AATTTCATATGGAAGTTATCAAAATTTCATAGTGTGGTTACCAA
1 AATTTCATA-GGAAGTTATCAAAATTCCATAGTGTGCTTACCAA
36555 AATTTCATAGGA
1 AATTTCATAGGA
36567 TCAGGTTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
43 4 0.08
44 48 0.92
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (43 bp):
AATTTCATAGGAAGTTATCAAAATTCCATAGTGTGCTTACCAA
Found at i:36538 original size:66 final size:66
Alignment explanation
Indices: 36432--36564 Score: 153
Period size: 66 Copynumber: 2.0 Consensus size: 66
36422 TCTTGTCTCT
* * * * * *
36432 GTGTGGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAG-GAGGTTATCAAAATTCCA
1 GTGTGCTTACCAAAATTTCATAAGATAGTTATCAAAATTTCAT-AGTGAGGTTACCAAAATTCCA
36496 TA
65 TA
* * *
36498 GTGTGCTTACCAAAATTTCATATGGA-AGTTATCAAAATTTCATAGTGTGGTTACCAAAATTTCA
1 GTGTGCTTACCAAAATTTCATA-AGATAGTTATCAAAATTTCATAGTGAGGTTACCAAAATTCCA
36562 TA
65 TA
36564 G
1 G
36565 GATCAGGTTA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
65 2 0.04
66 52 0.93
67 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (66 bp):
GTGTGCTTACCAAAATTTCATAAGATAGTTATCAAAATTTCATAGTGAGGTTACCAAAATTCCAT
A
Found at i:36677 original size:39 final size:39
Alignment explanation
Indices: 36608--36686 Score: 108
Period size: 39 Copynumber: 2.0 Consensus size: 39
36598 TGAAATTTCA
* *
36608 TAGTGTGGTTATCACAATTTTCTAGAAAGGTTATCAAAG
1 TAGTGTGGTTATCACAAATTTCTAGAAAGGTTATAAAAG
36647 TAGTGTGGTTATCA-AAATTTCATATG-AAGGTTATAAAAG
1 TAGTGTGGTTATCACAAATTTC-TA-GAAAGGTTATAAAAG
36686 T
1 T
36687 CTCAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 6 0.17
39 29 0.81
40 1 0.03
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (39 bp):
TAGTGTGGTTATCACAAATTTCTAGAAAGGTTATAAAAG
Found at i:37092 original size:22 final size:22
Alignment explanation
Indices: 37015--37513 Score: 164
Period size: 22 Copynumber: 22.9 Consensus size: 22
37005 CAAATTAGGA
* * *
37015 AGGTTATTAAACTTTTATTATGG
1 AGGTTATCAAAATTTCA-TATGG
* *
37038 A-GTAATCAAAATTTC--AGGG
1 AGGTTATCAAAATTTCATATGG
* * *
37057 AGGATAGCAAAATTTCATATGA
1 AGGTTATCAAAATTTCATATGG
**
37079 AGGTTATCAAAATTTCATAGTTT
1 AGGTTATCAAAATTTCATA-TGG
* * *
37102 A-GTTTTCAAAATTTCTTA-AG
1 AGGTTATCAAAATTTCATATGG
*
37122 AGGATTATCAAAATTTCATA-GT
1 AGG-TTATCAAAATTTCATATGG
* * *
37144 ATGTAAATCAAAATTTCATAGGG
1 AGGT-TATCAAAATTTCATATGG
* *
37167 AGATTAACAAAATTTCATAAT-G
1 AGGTTATCAAAATTTCAT-ATGG
**
37189 AGGTTATCAAAAAATCATA-GG
1 AGGTTATCAAAATTTCATATGG
* *
37210 AAGGTTGTCAAAA--T--T-TGT
1 -AGGTTATCAAAATTTCATATGG
* *
37228 A-GTTATCAAGATTTCATAAGG
1 AGGTTATCAAAATTTCATATGG
* *
37249 AGGTTATCAAAATTTTATAGGG
1 AGGTTATCAAAATTTCATATGG
* *
37271 AGGTTTATCAGAATTTTATA-GCG
1 AGG-TTATCAAAATTTCATATG-G
*
37294 AGGTTATCACAATTTCATAGTGTG
1 AGGTTATCAAAATTTCATA-TG-G
* *
37318 A--TTATCAAAATTTCAGAGTGT
1 AGGTTATCAAAATTTCATA-TGG
*
37339 A-ATTA-CTAACAA-TTCATATGG
1 AGGTTATC-AA-AATTTCATATGG
* * * * * *
37360 AGATTTTTAAATTTTCATAACGT
1 AGGTTATCAAAATTTCAT-ATGG
* * * * * *
37383 TGTTTTTTTAATATATCATATGG
1 AG-GTTATCAAAATTTCATATGG
* * *
37406 AGGTTATCAATATCTCATAGTGT
1 AGGTTATCAAAATTTCATA-TGG
*
37429 TGGTTATCAAAATTTCAT-TGGG
1 AGGTTATCAAAATTTCATAT-GG
*
37451 AAGTTATCAAAATTTCATA-GTG
1 AGGTTATCAAAATTTCATATG-G
* * *
37473 ATGTCT-TCAAAATTCCTTA-GAG
1 AGGT-TATCAAAATTTCATATG-G
*
37495 AGGTTAACAAAATTTCATA
1 AGGTTATCAAAATTTCATA
37514 AGAAAGTTAA
Statistics
Matches: 356, Mismatches: 84, Indels: 73
0.69 0.16 0.14
Matches are distributed among these distances:
16 8 0.02
17 1 0.00
18 3 0.01
19 4 0.01
20 14 0.04
21 15 0.04
22 244 0.69
23 52 0.15
24 15 0.04
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATATGG
Found at i:37198 original size:44 final size:44
Alignment explanation
Indices: 37042--37332 Score: 217
Period size: 44 Copynumber: 6.8 Consensus size: 44
37032 TTATGGAGTA
* * * * *
37042 ATCAAAATTTC--AGGGAGGATAGCAAAATTTCATATGAAGGTT
1 ATCAAAATTTCATAGTGAGGTTATCAAAATTTCATAGGGAGGTT
* * * *
37084 ATCAAAATTTCATAGTTTA-GTTTTCAAAATTTCTTA-AGAGGATT
1 ATCAAAATTTCATAG-TGAGGTTATCAAAATTTCATAGGGAGG-TT
* * *
37128 ATCAAAATTTCATAGT-ATGTAAATCAAAATTTCATAGGGAGATT
1 ATCAAAATTTCATAGTGAGGT-TATCAAAATTTCATAGGGAGGTT
* * ** *
37172 AACAAAATTTCATAATGAGGTTATCAAAAAATCATAGGAAGGTT
1 ATCAAAATTTCATAGTGAGGTTATCAAAATTTCATAGGGAGGTT
* * *
37216 GTCAAAA-TT--T-GT-A-GTTATCAAGATTTCATAAGGAGGTT
1 ATCAAAATTTCATAGTGAGGTTATCAAAATTTCATAGGGAGGTT
* * * * *
37254 ATCAAAATTTTATAGGGAGGTTTATCAGAATTTTATAGCGAGGTT
1 ATCAAAATTTCATAGTGAGG-TTATCAAAATTTCATAGGGAGGTT
* * *
37299 ATCACAATTTCATAGTGTGATTATCAAAATTTCA
1 ATCAAAATTTCATAGTGAGGTTATCAAAATTTCA
37333 GAGTGTAATT
Statistics
Matches: 191, Mismatches: 43, Indels: 28
0.73 0.16 0.11
Matches are distributed among these distances:
38 26 0.14
39 3 0.02
40 1 0.01
41 2 0.01
42 13 0.07
43 9 0.05
44 96 0.50
45 41 0.21
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.35
Consensus pattern (44 bp):
ATCAAAATTTCATAGTGAGGTTATCAAAATTTCATAGGGAGGTT
Found at i:37986 original size:24 final size:25
Alignment explanation
Indices: 37926--37993 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 25
37916 TTTTAGTTTG
* * **
37926 GAGTTTGTATTTGATTAAATTACTA
1 GAGTTTGGATTTGATTAAATAAAAA
*
37951 GACTTTGGATTTGATTAAA-AAAAA
1 GAGTTTGGATTTGATTAAATAAAAA
37975 GAGTTTGGATTTGATTAAA
1 GAGTTTGGATTTGATTAAA
37994 GTTACTAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 20 0.54
25 17 0.46
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (25 bp):
GAGTTTGGATTTGATTAAATAAAAA
Found at i:41097 original size:56 final size:56
Alignment explanation
Indices: 41011--41124 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
41001 TATCCGTTTC
*
41011 CTTTCACATAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
1 CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
41067 CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
1 CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
41123 CT
1 CT
41125 ACAAAATAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.40
Consensus pattern (56 bp):
CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
Found at i:41247 original size:42 final size:42
Alignment explanation
Indices: 41188--41270 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
41178 GCTAAAGATC
41188 ATGATTTGAGTTGAGTATTTCTTAATTTACA-AAGAATTTTCT
1 ATGATTTGAGTTGAGTATTTCTTAATTTACAGAA-AATTTTCT
41230 ATGATTTGAGTTGAGTATTTCTTAATTTACAGAAAATTTTC
1 ATGATTTGAGTTGAGTATTTCTTAATTTACAGAAAATTTTC
41271 AAGACTTAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.31, C:0.07, G:0.14, T:0.47
Consensus pattern (42 bp):
ATGATTTGAGTTGAGTATTTCTTAATTTACAGAAAATTTTCT
Found at i:58228 original size:22 final size:22
Alignment explanation
Indices: 58203--58249 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
58193 TATCCATATA
* *
58203 ACTATTTTATTTTTACCATTTT
1 ACTATTTTACTTTTACAATTTT
*
58225 ACTATTTTACTTTTATAATTTT
1 ACTATTTTACTTTTACAATTTT
58247 ACT
1 ACT
58250 CAACTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.26, C:0.13, G:0.00, T:0.62
Consensus pattern (22 bp):
ACTATTTTACTTTTACAATTTT
Found at i:58240 original size:93 final size:93
Alignment explanation
Indices: 58143--58326 Score: 314
Period size: 93 Copynumber: 2.0 Consensus size: 93
58133 TTAGAATATA
*
58143 TTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCATATAACTAT
1 TTTATAATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCATATAACTAT
* *
58208 TTTATTTTTACCATTTTACTATTTTACT
66 TTTATTTTTACCATATTACTAATTTACT
* *
58236 TTTATAATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACCTAT
1 TTTATAATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCATATAACTAT
*
58301 TTTATTTTTACGATATTACTAATTTA
66 TTTATTTTTACCATATTACTAATTTA
58327 ATTAAAAAGT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.34, C:0.14, G:0.01, T:0.51
Consensus pattern (93 bp):
TTTATAATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCATATAACTAT
TTTATTTTTACCATATTACTAATTTACT
Found at i:58991 original size:16 final size:16
Alignment explanation
Indices: 58952--58985 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
58942 TTGGCCTCAA
*
58952 GTCACTCGGATTTTGG
1 GTCATTCGGATTTTGG
*
58968 GTCATTCGGGTTTTGG
1 GTCATTCGGATTTTGG
58984 GT
1 GT
58986 TTTTCGACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.15, G:0.35, T:0.41
Consensus pattern (16 bp):
GTCATTCGGATTTTGG
Found at i:64095 original size:2 final size:2
Alignment explanation
Indices: 64090--64120 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
64080 TTTTTTATTC
64090 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64121 CTTGAATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70748 original size:23 final size:24
Alignment explanation
Indices: 70722--70776 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
70712 GCATCATTGA
*
70722 CCTTTT-ATCCTACTTACTCTCAT
1 CCTTTTGATCATACTTACTCTCAT
* *
70745 CCTTTTGGCTGATACTTACTCTCAT
1 CCTTTT-GATCATACTTACTCTCAT
70770 CCTTTTG
1 CCTTTTG
70777 GCAACCTCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.22
24 1 0.04
25 20 0.74
ACGTcount: A:0.15, C:0.31, G:0.07, T:0.47
Consensus pattern (24 bp):
CCTTTTGATCATACTTACTCTCAT
Found at i:73820 original size:23 final size:23
Alignment explanation
Indices: 73794--73850 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
73784 TAAACGTATC
*
73794 TTAAACGTGTTATTTCGTAGCAG
1 TTAAACGTGTTATTTCATAGCAG
**
73817 TTAAAAATGTTATTTCATAGCAG
1 TTAAACGTGTTATTTCATAGCAG
73840 TTAAACGTGTT
1 TTAAACGTGTT
73851 GACACGTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (23 bp):
TTAAACGTGTTATTTCATAGCAG
Found at i:73907 original size:20 final size:19
Alignment explanation
Indices: 73870--73910 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
73860 ACACGAATAA
*
73870 TTTAATGTGTTAGCCGTGT
1 TTTAATGTGTTAACCGTGT
*
73889 TTTAATCGTGTTAATCGTGT
1 TTTAAT-GTGTTAACCGTGT
73909 TT
1 TT
73911 GACACGGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.17, C:0.10, G:0.22, T:0.51
Consensus pattern (19 bp):
TTTAATGTGTTAACCGTGT
Found at i:76244 original size:161 final size:161
Alignment explanation
Indices: 75972--76271 Score: 521
Period size: 161 Copynumber: 1.9 Consensus size: 161
75962 GTGCTAGAAG
*
75972 GGAACACATGGATATTATGGTGCAGTCTAGCAGAGAAAAAAATGTCTCGGAGTTTGTGATTTTTG
1 GGAACACATGGATATTATGGTGCAGTCTAGCAGAGAAAAAAATGTCTCGGAGTTTGTGATTTCTG
* *
76037 GAAGCACCCAAGATGAGTATTTTCTAGAGAAATTGCCTATTGAAAGGTGTGTTCCTAATTATACT
66 GAAGCACCCAAAATGAGTATTTTCTAGAGAAATTGCCTACTGAAAGGTGTGTTCCTAATTATACT
76102 CATTTTTCACGTGGATATTATGGTGCAGTCT
131 CATTTTTCACGTGGATATTATGGTGCAGTCT
* * *
76133 GGAACACATGGATATTATGGTGCATTCTGGCAGCA-AAAAGAATGTCTCGGAGTTTGTGATTTCT
1 GGAACACATGGATATTATGGTGCAGTCTAGCAG-AGAAAAAAATGTCTCGGAGTTTGTGATTTCT
*
76197 GGAAGCACCCAAAATGAGTATTTTCTGGAGAAATTGCCTACTGAAAGGTGTGTTCCTAATTATAC
65 GGAAGCACCCAAAATGAGTATTTTCTAGAGAAATTGCCTACTGAAAGGTGTGTTCCTAATTATAC
76262 TCATTTTTCA
130 TCATTTTTCA
76272 GATTCCATAG
Statistics
Matches: 131, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
161 130 0.99
162 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (161 bp):
GGAACACATGGATATTATGGTGCAGTCTAGCAGAGAAAAAAATGTCTCGGAGTTTGTGATTTCTG
GAAGCACCCAAAATGAGTATTTTCTAGAGAAATTGCCTACTGAAAGGTGTGTTCCTAATTATACT
CATTTTTCACGTGGATATTATGGTGCAGTCT
Found at i:81553 original size:16 final size:16
Alignment explanation
Indices: 81532--81562 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81522 GATCTTTGAT
*
81532 GTCTTAAATATGAAGG
1 GTCTTAAAGATGAAGG
81548 GTCTTAAAGATGAAG
1 GTCTTAAAGATGAAG
81563 CTAGATTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29
Consensus pattern (16 bp):
GTCTTAAAGATGAAGG
Found at i:82537 original size:36 final size:36
Alignment explanation
Indices: 82490--82562 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
82480 GTGATGTTCA
* *
82490 ATCTTTGTCTTGT-TAAGTTTGGGTATTCTATAAATT
1 ATCTTTATCTTGTCTAA-CTTGGGTATTCTATAAATT
*
82526 ATCTTTATCTTGTCTTACTTGGGTATTCTATAAATT
1 ATCTTTATCTTGTCTAACTTGGGTATTCTATAAATT
82562 A
1 A
82563 AGGAAGAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 31 0.94
37 2 0.06
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (36 bp):
ATCTTTATCTTGTCTAACTTGGGTATTCTATAAATT
Found at i:86225 original size:18 final size:18
Alignment explanation
Indices: 86202--86238 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
86192 TATAATCAAA
86202 CTATTTTATGTTTCCAAT
1 CTATTTTATGTTTCCAAT
86220 CTATTTTATGTTTCCAAT
1 CTATTTTATGTTTCCAAT
86238 C
1 C
86239 GAATAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.05, T:0.54
Consensus pattern (18 bp):
CTATTTTATGTTTCCAAT
Found at i:86713 original size:24 final size:24
Alignment explanation
Indices: 86681--86736 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
86671 TAATTTGACT
86681 TAAATTACAATCAATTAAGAATCA
1 TAAATTACAATCAATTAAGAATCA
86705 TAAATTACAATCAATTAAGAATCA
1 TAAATTACAATCAATTAAGAATCA
86729 TAAATTAC
1 TAAATTAC
86737 CCCAAATCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.30
Consensus pattern (24 bp):
TAAATTACAATCAATTAAGAATCA
Done.