Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014184.1 Corchorus olitorius cultivar O-4 contig14217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3435

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
730--1382
22
30.0
22
71
10
291
35
15
9
39
1.80
826--951
67
1.9
66
80
8
148
36
15
11
37
1.83
868--953
45
1.9
45
83
4
111
38
15
10
36
1.81
1472--1634
89
1.8
88
80
5
193
34
14
9
41
1.78
1664--1703
20
2.1
19
90
4
62
35
12
12
40
1.81
1492--1860
22
16.7
21
69
13
149
33
17
9
40
1.82
1890--2101
22
9.5
22
71
12
141
36
18
9
34
1.84
1869--2101
66
3.5
66
83
7
265
36
18
9
35
1.83
1865--2097
44
5.2
43
74
9
175
35
17
9
36
1.83
3108--3142
18
1.9
18
94
0
61
51
11
8
28
1.67
3267--3314
18
2.5
19
83
10
62
52
0
0
47
1.00
3341--3410
35
2.0
36
94
2
124
41
17
18
22
1.90

Tables:   1

The End!