Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014187.1 Corchorus olitorius cultivar O-4 contig14220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41524

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2176--2279
52
2.0
52
100
0
208
36
23
7
32
1.83
2980--3054
28
2.9
25
80
18
98
52
22
10
14
1.73
3829--3900
38
1.9
37
88
2
108
50
15
8
26
1.72
4417--4588
45
3.8
45
93
4
283
55
11
12
20
1.67
11105--11267
83
2.0
82
86
3
229
24
22
22
30
1.99
12616--12645
15
1.9
16
93
6
53
63
6
10
20
1.47
14703--14833
65
2.0
65
92
0
217
16
22
11
50
1.76
17198--17293
48
2.0
48
97
0
183
34
16
26
22
1.95
25265--25315
25
2.0
25
92
0
84
49
11
15
23
1.78
32802--32836
3
11.7
3
93
0
61
0
28
37
34
1.58
34523--34547
1
25.0
1
100
0
50
100
0
0
0
0.00
35058--35136
4
20.5
4
84
5
83
44
0
7
48
1.31
35072--35133
8
7.8
8
90
0
97
40
0
9
50
1.35
36143--36167
2
12.5
2
100
0
50
52
0
0
48
1.00
37580--37650
30
2.4
30
90
0
106
39
4
4
52
1.41
37580--37668
30
3.0
29
83
3
97
40
4
3
51
1.39
38382--40273
816
2.3
820
98
0
3706
41
10
12
35
1.77
40564--40652
30
3.0
30
83
6
117
41
3
3
51
1.35

Tables:   1

The End!