Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014188.1 Corchorus olitorius cultivar O-4 contig14221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38215

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1825--2368
271
2.0
272
96
0
1000
44
11
19
25
1.83
6864--6913
25
2.0
25
96
0
91
44
30
6
20
1.75
9359--9523
31
5.5
30
67
15
99
26
20
18
34
1.96
9359--9519
60
2.7
60
91
1
252
26
19
18
35
1.95
13830--13855
3
8.7
3
100
0
52
69
0
0
30
0.89
17469--17509
16
2.4
16
88
12
55
31
4
4
58
1.40
17463--17511
19
2.6
19
75
18
57
30
4
4
61
1.33
21745--21780
18
2.0
18
94
0
63
63
2
11
22
1.39
23888--23960
26
3.0
26
70
9
64
52
5
2
39
1.39
24210--24251
20
2.1
20
100
0
84
33
0
28
38
1.58
24647--24688
20
2.1
20
86
8
59
0
9
9
80
0.89
24647--24702
13
4.5
12
74
10
51
1
10
7
80
0.97
25046--25088
21
2.0
20
86
13
59
13
55
9
20
1.66
26114--26138
12
2.1
12
100
0
50
24
0
24
52
1.48
26420--26818
198
2.0
198
100
0
798
25
26
17
30
1.97
30319--30386
25
2.6
25
86
13
86
64
8
14
11
1.49
30334--30386
25
2.1
25
93
6
90
66
9
13
11
1.46
31478--31511
11
2.9
11
91
8
50
79
0
20
0
0.73
31879--31921
18
2.6
16
82
17
52
65
9
6
18
1.44
32302--32359
26
2.2
26
90
0
89
50
18
13
17
1.79
34679--34704
2
13.0
2
100
0
52
50
0
0
50
1.00
35814--35906
33
2.8
33
95
0
168
25
19
24
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36124--36169
19
2.4
19
85
7
58
23
6
15
54
1.64

Tables:   1

The End!