Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014196.1 Corchorus olitorius cultivar O-4 contig14229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39594

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3044--3145
51
2.0
52
81
9
120
22
23
13
40
1.90
4263--4310
24
2.0
24
100
0
96
20
20
25
33
1.97
4594--4700
54
2.0
54
100
0
214
36
18
9
35
1.83
4603--4691
26
3.3
26
70
11
90
41
17
8
31
1.81
8328--8370
22
2.0
22
81
9
52
60
0
27
11
1.31
10216--10301
45
1.9
45
82
0
109
51
26
2
19
1.59
10204--11075
432
2.0
433
97
1
1640
47
23
11
18
1.80
11138--11174
2
18.5
2
100
0
74
48
0
0
51
1.00
11884--11983
21
4.6
22
77
5
87
40
6
12
42
1.67
11863--11988
22
5.8
22
73
10
89
40
6
11
42
1.66
12200--12241
19
2.2
19
91
4
66
45
4
7
42
1.52
13482--13521
2
20.0
2
100
0
80
50
0
0
50
1.00
23635--23757
57
2.2
58
82
7
171
40
20
1
37
1.62
23811--23890
42
1.9
42
97
0
151
30
7
15
47
1.72
24811--24977
55
3.0
55
96
0
298
35
24
1
38
1.66
25290--25370
42
1.9
42
94
0
144
29
6
17
46
1.72
39207--39249
21
2.0
22
86
4
61
44
2
0
53
1.13

Tables:   1

The End!