Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014198.1 Corchorus olitorius cultivar O-4 contig14231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4803
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28


Found at i:3027 original size:25 final size:25

Alignment explanation


    Indices: 2999--3052  Score: 76
    Period size: 25  Copynumber: 2.2  Consensus size: 25

       2989 ACCCAAAATC

                                       
       2999 ATTTAATAAAA-A-TAATTTAAAAACA
          1 ATTTAATAAAACAGTAA--TAAAAACA

                                     
       3024 ATTTAATAAAACAGTAATAAAAACA
          1 ATTTAATAAAACAGTAATAAAAACA

                
       3049 ATTT
          1 ATTT

       3053 CCTCAACGGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  25   23  0.85
  26    1  0.04
  27    3  0.11

ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31


Consensus pattern (25 bp):   
ATTTAATAAAACAGTAATAAAAACA
Done.