Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014200.1 Corchorus olitorius cultivar O-4 contig14233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61003

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5092--5158
22
3.0
22
95
0
116
13
44
25
16
1.84
7108--7194
43
2.0
43
100
0
174
39
9
18
33
1.82
7110--7213
43
2.4
43
91
3
147
42
7
20
29
1.80
9388--9469
31
2.6
32
83
7
96
23
23
7
46
1.77
17190--17286
4
24.2
4
100
0
194
24
0
24
50
1.49
17284--17315
4
8.0
4
100
0
64
50
0
0
50
1.00
17284--17315
6
5.3
6
100
0
64
50
0
0
50
1.00
17315--17384
2
35.0
2
100
0
140
50
0
50
0
1.00
17461--17519
31
2.0
31
86
6
86
57
1
13
27
1.46
17900--17939
13
3.1
13
85
0
53
45
15
15
25
1.84
18254--18286
15
2.1
16
88
5
50
30
6
9
54
1.56
20690--20731
20
2.2
20
82
4
50
54
19
2
23
1.55
22894--22927
17
2.0
17
88
0
50
14
2
14
67
1.34
23682--24742
35
30.3
34
81
6
956
42
20
19
17
1.89
23652--24742
105
10.4
105
82
4
1098
42
21
19
17
1.89
24722--24764
22
2.0
22
90
0
68
51
9
16
23
1.73
28341--28376
19
1.9
18
88
5
54
36
22
0
41
1.54
31382--31418
5
7.6
5
87
6
58
78
21
0
0
0.75
31382--31418
15
2.6
14
95
4
65
78
21
0
0
0.75
35829--35876
25
1.9
25
95
0
87
39
10
18
31
1.85
36015--36113
26
3.7
26
78
5
99
41
23
16
19
1.90
40673--40841
90
1.9
89
91
1
275
39
13
19
27
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41957--42093
33
4.2
33
100
0
274
27
5
11
55
1.58
43474--43928
179
2.6
177
81
6
542
34
15
15
34
1.90
44821--44942
49
2.5
47
84
3
145
52
4
18
24
1.65
53470--53505
19
1.9
18
88
5
54
33
22
2
41
1.68
54734--54779
22
2.1
22
100
0
92
65
13
4
17
1.42

Tables:   1

The End!