Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014203.1 Corchorus olitorius cultivar O-4 contig14236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10043
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32


Found at i:9510 original size:2 final size:2

Alignment explanation


    Indices: 9503--9533  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       9493 AGCTATTTTC

                                                          
       9503 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       9534 CACAGAAATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:9627 original size:8 final size:9

Alignment explanation


    Indices: 9601--9625  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       9591 ATGGTACAAT

                     
       9601 TTCTTTTTC
          1 TTCTTTTTC

                     
       9610 TTCTTTTTC
          1 TTCTTTTTC

                   
       9619 TTCTTTT
          1 TTCTTTT

       9626 CTATCCTTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (9 bp):   
TTCTTTTTC
Done.