Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014204.1 Corchorus olitorius cultivar O-4 contig14237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52299

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13095--13130
19
1.9
18
88
5
54
33
22
2
41
1.68
14014--14122
4
27.5
4
71
15
84
66
0
5
27
1.13
14013--14124
27
4.5
27
73
21
100
66
0
5
27
1.13
14002--14120
45
2.6
45
90
4
177
66
0
6
26
1.16
14043--14114
19
3.4
19
71
23
63
66
0
5
27
1.13
14041--14118
23
3.4
23
78
16
99
67
0
5
26
1.11
15564--15916
54
6.5
54
84
7
398
32
23
16
27
1.96
20318--20343
4
6.5
4
100
0
52
76
0
0
23
0.78
28162--28218
24
2.4
24
82
5
71
57
1
19
21
1.49
28174--28215
16
2.6
16
80
0
57
61
2
16
19
1.44
28236--28348
27
4.5
27
75
22
111
66
0
5
27
1.19
28221--28345
46
2.7
46
91
3
191
66
0
6
26
1.21
28234--28346
19
6.1
19
71
16
69
66
0
5
27
1.19
39509--39538
3
10.3
3
92
7
53
63
0
36
0
0.95
43536--43602
18
3.7
18
77
0
80
19
29
23
26
1.98
45766--45961
97
2.0
97
98
0
383
16
22
19
40
1.91
47046--47147
51
2.0
51
96
0
186
21
16
41
20
1.90

Tables:   1

The End!