genome.fa.s14206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014206.1 Corchorus olitorius cultivar O-4 contig14239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56725

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16615--16654	2	20.0	2	100	0	80	50	0	0	50	1.00
16927--16962	16	2.2	16	95	0	63	19	36	8	36	1.82
19293--19369	22	3.6	21	82	5	100	41	9	7	41	1.65
19282--19369	22	4.2	20	79	13	88	39	7	9	43	1.66
19929--20545	155	4.0	155	90	0	930	35	25	8	31	1.86
19959--20546	309	1.9	310	90	1	946	35	24	8	31	1.86
21365--22865	220	6.9	222	81	8	1772	36	6	19	36	1.79
21365--22865	441	3.5	432	86	7	1981	36	6	19	36	1.79
22172--22569	196	2.0	198	88	2	588	37	6	17	38	1.76
25185--25226	13	3.2	13	80	9	50	61	14	7	16	1.53
31459--31599	70	2.0	70	97	0	264	14	22	37	24	1.92
31578--31616	12	3.1	12	79	13	51	15	15	41	28	1.87
31555--31621	26	2.6	25	83	6	80	13	14	43	28	1.84
31724--31807	23	3.8	23	80	12	113	14	17	45	22	1.85
31722--31805	42	2.0	42	100	0	168	14	16	45	23	1.84
33353--33392	16	2.5	16	91	0	62	25	30	30	15	1.95
33633--33773	70	2.0	70	94	0	246	15	21	36	25	1.93
33752--33794	12	3.4	12	81	12	59	16	13	41	27	1.86
33729--33795	26	2.6	25	86	6	89	14	13	41	29	1.85
33877--33939	23	2.6	25	88	11	89	15	20	41	22	1.90
35545--35575	14	2.1	15	94	5	55	83	0	9	6	0.79
43608--43684	38	2.0	38	100	0	154	41	20	14	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56267--56344	27	2.9	27	88	0	120	35	28	17	17	1.94
56597--56718	50	2.4	50	89	5	174	26	27	11	35	1.91
56624--56724	50	2.0	50	98	0	193	25	28	11	33	1.91

Tables:   1

The End!