Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014208.1 Corchorus olitorius cultivar O-4 contig14241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22689

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14--69
26
2.2
25
84
9
69
17
23
21
37
1.94
106--156
16
3.2
16
81
10
59
27
23
3
45
1.70
106--156
8
6.4
8
75
8
50
27
23
3
45
1.70
97--156
24
2.5
24
84
7
70
26
26
5
41
1.76
298--375
37
2.1
38
95
2
140
35
17
19
26
1.94
346--458
54
2.1
54
83
3
138
28
14
23
33
1.94
456--659
42
4.9
42
89
1
286
25
16
28
28
1.97
1052--1131
26
3.0
26
76
5
81
18
22
22
36
1.95
7894--8047
77
2.0
77
98
0
299
41
11
16
30
1.83
8812--8863
25
2.1
25
85
3
70
26
1
32
38
1.68
9024--9224
100
2.0
100
95
0
357
34
20
17
27
1.95
10826--10926
20
5.3
20
75
13
106
24
18
40
15
1.90
10700--10949
37
6.7
37
82
2
250
28
16
38
17
1.91
10977--11037
30
2.0
30
83
0
77
27
13
32
26
1.93
14021--14146
27
4.9
27
76
11
120
14
29
29
26
1.95
14061--14100
21
1.9
21
94
0
71
20
25
27
27
1.99
14034--14127
48
2.0
48
89
0
143
17
26
28
27
1.97
14728--14865
19
7.3
20
66
14
96
25
16
39
18
1.91
14818--14874
18
3.1
18
71
14
62
26
19
38
15
1.92
14602--14873
37
7.3
37
78
2
249
27
15
37
19
1.92
14892--14970
30
2.7
29
78
5
88
22
15
32
29
1.95
17240--17281
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!