Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014221.1 Corchorus olitorius cultivar O-4 contig14254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27848

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1964
332
5.9
334
90
3
2993
35
16
14
33
1.90
1--1911
655
2.9
654
91
3
2996
35
16
14
33
1.90
2224--2278
17
3.2
17
86
0
74
36
21
21
20
1.95
6231--6429
30
6.6
30
87
2
193
20
19
30
29
1.97
6231--6429
90
2.2
90
83
1
238
20
19
30
29
1.97
6327--6463
60
2.3
60
84
0
166
23
19
25
31
1.98
6267--6460
90
2.2
90
82
1
228
22
19
28
30
1.98
13998--14035
13
2.8
13
92
4
58
86
0
13
0
0.56
17983--18065
30
2.8
29
77
14
80
44
14
20
20
1.86
19865--19893
2
15.0
2
92
7
51
51
0
0
48
1.00
19866--19891
13
2.0
13
100
0
52
53
0
0
46
1.00
19865--19893
15
1.9
15
100
0
58
51
0
0
48
1.00
20571--20609
18
2.1
19
95
4
71
64
10
10
15
1.50
20754--20779
12
2.2
12
100
0
52
42
15
0
42
1.47
26566--26605
21
1.9
21
94
0
71
40
10
15
35
1.80

Tables:   1

The End!