Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014223.1 Corchorus olitorius cultivar O-4 contig14256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104219

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4150--4175
3
8.7
3
100
0
52
30
0
0
69
0.89
4815--4862
16
3.2
15
80
16
55
39
0
2
58
1.10
14987--15155
91
1.9
90
84
1
230
30
20
14
34
1.92
15259--15422
80
2.1
79
95
4
294
32
18
12
36
1.88
15074--15665
325
1.8
325
99
0
1166
32
20
13
33
1.91
16372--16668
95
3.2
95
74
14
326
31
19
14
34
1.92
31132--31199
32
2.1
32
83
5
84
38
22
4
35
1.74
35075--35156
43
1.9
43
97
0
155
31
23
20
24
1.98
35276--35309
1
34.0
1
100
0
68
100
0
0
0
0.00
42045--42070
2
13.0
2
100
0
52
50
0
0
50
1.00
62215--62246
15
2.1
15
100
0
64
28
12
18
40
1.87
70764--70865
35
2.9
35
97
0
195
40
11
8
39
1.73
77163--77200
18
2.1
18
100
0
76
36
15
0
47
1.46
83403--83439
19
2.0
19
89
5
58
35
0
0
64
0.94
99681--104219
336
13.6
332
85
5
5528
34
15
16
34
1.90

Tables:   1

The End!