Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014226.1 Corchorus olitorius cultivar O-4 contig14259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13476

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4656--4684
15
1.9
15
100
0
58
34
13
17
34
1.89
7074--7458
40
9.6
40
86
5
519
34
7
26
31
1.84
7074--7462
81
4.8
80
91
3
572
34
7
26
31
1.84
9517--9610
48
2.0
48
87
4
136
41
19
15
23
1.90
9530--9640
48
2.3
48
79
3
125
38
19
17
24
1.92
9694--9836
48
3.0
48
90
2
216
36
23
18
20
1.95
10232--10356
49
2.5
49
93
3
207
38
28
12
20
1.89
10356--11173
96
8.6
93
74
9
503
39
23
15
21
1.92
10356--11173
191
4.3
188
77
5
653
39
23
15
21
1.92
10383--11349
48
20.3
46
73
8
377
39
23
15
21
1.91
11147--11592
221
2.0
221
99
0
883
40
21
14
23
1.90
11500--11659
88
1.8
87
81
9
200
40
22
14
22
1.90
11672--11827
48
3.2
46
77
10
161
41
19
15
23
1.89
11688--11827
49
2.9
48
81
5
183
42
20
14
22
1.88
11688--11835
48
3.1
48
77
10
167
42
20
14
22
1.88
12581--13270
332
2.1
333
87
3
987
32
14
18
34
1.91
13448--13476
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!