genome.fa.s14231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014231.1 Corchorus olitorius cultivar O-4 contig14264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77292

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522--558	19	1.9	19	88	0	56	40	2	18	37	1.65
16847--17348	251	2.0	251	95	1	900	26	20	17	36	1.94
17902--18399	249	2.0	249	94	1	874	34	18	20	26	1.96
27170--27283	57	2.0	57	100	0	228	17	17	22	42	1.89
27397--27435	16	2.4	16	82	0	51	66	17	0	15	1.25
27803--27837	17	2.1	17	88	0	52	54	0	22	22	1.45
28687--28720	17	2.1	17	88	5	52	52	2	0	44	1.16
30293--30350	21	2.8	21	89	0	89	43	8	6	41	1.62
33157--33217	27	2.3	27	83	11	72	45	0	9	44	1.37
34395--34473	27	2.9	27	88	3	104	25	22	10	41	1.85
35592--35651	31	2.1	28	87	12	86	20	15	23	41	1.89
36935--36989	29	1.9	28	88	3	83	27	18	9	45	1.79
36935--36997	29	2.2	28	80	8	72	26	17	11	44	1.82
38140--38200	22	2.7	23	75	10	63	36	6	13	44	1.69
40317--40367	19	2.6	19	81	6	57	33	15	13	37	1.87
42044--42077	6	5.5	6	96	3	59	47	0	32	20	1.51
42049--42097	18	2.7	18	87	0	62	44	2	36	16	1.59
54176--54217	12	3.5	12	90	0	57	7	35	2	54	1.41
54182--54216	15	2.3	15	90	0	52	5	34	2	57	1.37
56826--56878	26	2.0	26	96	0	97	16	15	20	47	1.83
58266--58291	12	2.2	12	100	0	52	7	15	23	53	1.67
59341--59376	9	3.9	9	85	7	54	27	2	13	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60198--60297	50	2.0	50	94	0	173	31	25	10	34	1.89
63652--64012	180	2.0	180	98	0	704	21	14	23	39	1.91
66165--66209	23	2.0	23	100	0	90	17	24	48	8	1.75
66262--66457	51	4.1	48	74	18	158	29	24	16	30	1.96
66262--66365	48	2.1	49	89	5	156	29	25	14	30	1.95
66368--66474	42	2.7	39	78	13	110	29	23	19	27	1.98
66512--66573	30	2.2	28	82	8	72	29	22	22	25	1.99
72194--72246	13	3.8	13	72	13	52	54	11	0	33	1.36
72733--72780	16	2.9	16	78	6	60	29	8	6	56	1.53

Tables:   1

The End!