genome.fa.s14232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014232.1 Corchorus olitorius cultivar O-4 contig14265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169288

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888--932	15	3.0	15	86	0	63	26	11	26	35	1.90
1891--3965	960	2.1	956	87	4	2924	35	17	14	31	1.90
1891--3939	320	6.4	320	84	6	2476	35	17	14	31	1.90
4845--4879	16	2.2	16	89	0	52	5	31	5	57	1.46
18715--18812	52	1.9	51	97	2	187	35	24	8	31	1.85
27646--27707	11	5.5	11	78	14	56	41	0	58	0	0.98
27713--27813	23	4.6	21	72	21	75	62	0	37	0	0.96
27756--27810	15	3.4	16	82	14	60	65	0	34	0	0.93
27773--27819	20	2.3	20	82	7	60	72	0	27	0	0.85
27719--27819	25	4.3	24	78	14	79	64	0	35	0	0.94
39334--39818	249	1.9	248	89	2	749	24	17	21	36	1.95
41454--41543	27	3.3	27	100	0	180	26	16	6	50	1.70
41915--41965	24	2.1	24	100	0	102	52	7	7	31	1.59
48160--53393	333	15.8	333	88	3	7427	33	13	17	35	1.89
53539--53566	12	2.3	12	100	0	56	39	7	7	46	1.59
53804--53874	33	2.2	33	94	2	126	26	18	15	39	1.90
54196--54220	10	2.5	10	100	0	50	52	8	8	32	1.60
54735--54867	70	1.9	70	95	0	239	29	22	20	27	1.98
54912--55076	87	1.9	87	96	0	303	24	15	29	30	1.95
55766--55809	17	2.6	18	82	13	58	65	0	0	34	0.93
61519--61550	16	2.0	16	100	0	64	25	18	25	31	1.98
71748--71865	59	2.0	59	94	0	209	33	9	17	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72883--72948	18	3.7	17	75	16	62	28	7	42	21	1.80
72928--73055	42	3.2	41	70	13	113	27	7	42	22	1.79
72891--73055	78	2.1	78	90	0	258	27	7	43	21	1.79
72883--73027	36	3.9	36	73	10	137	30	6	41	21	1.79
73198--73257	18	3.3	18	85	0	84	36	41	1	20	1.62
73299--73359	30	2.0	30	100	0	122	31	29	13	26	1.93
78042--78077	1	36.0	1	100	0	72	100	0	0	0	0.00
84348--84453	53	2.0	53	96	0	194	47	23	9	19	1.79
95897--95958	21	3.0	20	79	9	79	22	45	3	29	1.68
115249--115280	7	4.6	7	96	0	55	21	12	18	46	1.82
122958--122989	12	2.7	12	100	0	64	53	31	15	0	1.43
123275--123333	19	3.0	19	85	5	73	32	22	11	33	1.90
127270--127324	17	3.2	17	82	10	67	41	20	16	21	1.90
139590--139638	24	2.0	24	100	0	98	38	12	24	24	1.90
157747--157771	7	3.6	7	100	0	50	0	0	32	68	0.90
159328--159360	15	2.2	15	94	0	57	39	21	3	36	1.69
161614--161786	86	2.0	86	96	0	319	31	4	19	43	1.71
168720--168761	20	2.0	20	86	4	57	38	19	19	23	1.93

Tables:   1

The End!