Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014233.1 Corchorus olitorius cultivar O-4 contig14266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80056

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25340--25378
2
19.5
2
94
0
69
2
0
46
51
1.14
31068--31341
51
5.3
51
93
2
451
36
16
20
26
1.93
31067--31341
103
2.7
103
93
3
473
36
16
20
26
1.93
31064--31341
154
1.8
154
92
3
479
36
15
20
27
1.93
31360--31778
225
1.9
218
89
4
651
31
15
19
34
1.93
31971--32250
52
5.4
52
95
2
485
33
17
20
28
1.95
32681--32709
7
4.1
7
100
0
58
0
0
27
72
0.85
34719--39832
332
15.4
331
81
5
5403
35
17
14
32
1.91
41896--42061
86
1.9
85
95
1
296
28
31
30
9
1.89
42127--42194
35
1.9
35
96
0
127
51
13
26
8
1.70
42215--42345
4
32.5
4
93
4
219
26
0
73
0
0.84
42348--42393
2
23.5
2
91
4
76
45
2
52
0
1.13
66528--66564
13
2.8
13
87
0
56
16
43
8
32
1.77
66563--66642
40
2.0
40
87
0
115
40
16
16
27
1.89
66735--66773
13
2.9
13
92
3
51
41
10
35
12
1.77
66743--66773
13
2.4
13
100
0
62
35
6
45
12
1.68
79657--79689
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!