Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014234.1 Corchorus olitorius cultivar O-4 contig14267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57350

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15183--15211
13
2.3
13
94
5
51
24
10
0
65
1.23
19555--19719
60
2.8
60
81
4
208
35
17
18
27
1.94
20253--20655
72
5.5
72
87
5
563
29
16
25
28
1.97
20497--20654
81
2.0
81
97
0
298
29
15
24
29
1.96
23006--23435
164
2.6
166
96
1
801
26
13
21
37
1.91
23477--23868
166
2.3
166
92
2
644
29
12
21
36
1.90
23101--23813
378
1.9
375
90
1
1140
28
13
21
36
1.92
25033--25082
25
2.0
25
100
0
100
28
32
24
16
1.96
29538--29595
26
2.2
26
81
0
71
55
17
0
27
1.42
31966--31990
2
12.5
2
100
0
50
48
0
0
52
1.00
35922--35985
33
2.0
32
81
9
76
9
14
18
57
1.63
36445--36599
79
2.0
75
92
5
256
43
9
12
34
1.76
37720--37746
13
2.1
13
100
0
54
44
0
7
48
1.31
39685--39735
22
2.3
22
83
6
68
52
5
21
19
1.66
43106--43130
6
4.2
6
100
0
50
84
0
16
0
0.63
54605--54683
24
3.1
24
84
13
113
53
25
12
8
1.67
54615--54671
28
2.0
28
96
0
105
52
24
12
10
1.70
55092--55165
16
4.3
17
73
18
64
56
1
1
40
1.16

Tables:   1

The End!