genome.fa.s14241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014241.1 Corchorus olitorius cultivar O-4 contig14274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  244063

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7885--7956	37	1.9	37	97	0	135	16	9	23	50	1.75
18920--18952	15	2.2	15	100	0	66	12	0	12	75	1.04
28716--29122	93	4.5	91	89	3	575	27	21	13	37	1.91
29055--29194	72	1.9	72	95	0	253	27	22	13	35	1.92
29122--29311	93	2.1	90	85	8	242	30	22	12	35	1.91
30327--30448	62	2.0	62	96	1	226	59	9	12	18	1.60
30952--30984	2	16.5	2	100	0	66	51	0	0	48	1.00
34784--34827	21	2.0	22	86	8	63	47	22	18	11	1.80
47917--47965	24	2.0	24	100	0	98	28	8	8	55	1.58
47951--48042	13	7.2	13	67	9	64	28	3	8	59	1.43
47984--48028	24	1.9	24	95	4	83	28	6	8	55	1.56
47920--48049	63	2.0	64	98	1	253	26	5	9	58	1.51
48024--48127	51	2.0	52	98	1	201	42	5	14	37	1.70
72484--72526	18	2.4	18	88	0	68	25	27	25	20	1.99
73886--73958	36	2.0	36	89	0	110	26	35	17	20	1.95
80385--80413	7	4.3	7	91	8	51	13	13	24	48	1.79
80385--80413	13	2.1	14	93	6	51	13	13	24	48	1.79
91051--91292	130	1.9	131	97	0	459	40	12	18	28	1.87
120528--120621	33	2.9	33	96	3	174	38	2	31	27	1.69
132968--134459	648	2.3	647	88	3	2260	36	16	13	32	1.89
135400--135448	24	2.0	24	100	0	98	44	18	4	32	1.68
134936--136710	331	5.4	330	77	8	1765	37	16	14	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137199--137508	97	3.2	95	70	12	274	39	8	19	32	1.81
137127--137411	93	3.0	93	71	12	267	39	8	21	31	1.82
137113--137507	190	2.1	189	91	0	637	38	8	20	32	1.82
138141--139321	649	1.8	642	79	8	1366	36	16	13	33	1.88
139800--144797	655	7.7	651	82	7	4158	36	16	14	32	1.89
139800--144910	320	15.7	319	76	8	4131	36	16	14	32	1.89
139800--144908	974	5.2	964	77	9	4206	36	16	14	32	1.89
145056--145089	11	3.1	11	91	0	50	11	17	11	58	1.62
145312--146212	331	2.8	318	77	11	914	37	16	14	31	1.89
145744--146685	472	2.0	471	89	2	1455	37	17	12	32	1.87
146215--150356	652	6.4	652	84	5	5126	36	17	13	32	1.89
146255--150356	321	12.7	321	76	9	3363	36	17	13	32	1.89
151014--151054	15	2.7	15	88	3	55	53	2	0	43	1.13
153229--153262	2	17.0	2	100	0	68	50	0	0	50	1.00
156151--156227	31	2.5	30	79	8	82	38	18	7	35	1.79
157388--157442	21	2.6	22	80	5	69	50	3	32	12	1.58
160342--160371	2	15.5	2	93	6	53	50	0	0	50	1.00
161081--161118	3	12.7	3	100	0	76	31	0	0	68	0.90
165979--166006	12	2.3	12	100	0	56	17	35	0	46	1.49
174143--174191	24	2.0	25	92	4	82	48	14	20	16	1.80
181070--181095	5	5.2	5	100	0	52	80	0	19	0	0.71
182743--182783	21	2.0	21	86	9	59	17	41	12	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198136--198168	2	16.5	2	100	0	66	51	0	0	48	1.00
200681--200716	15	2.2	17	90	9	58	27	13	5	52	1.63
231883--231908	7	3.7	7	100	0	52	46	15	23	15	1.83
233159--233193	18	2.0	18	88	5	54	42	45	11	0	1.40
239081--239113	3	10.7	3	93	6	57	30	0	0	69	0.88
239074--239122	9	5.3	9	85	4	53	28	0	0	71	0.86

Tables:   1

The End!