Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014242.1 Corchorus olitorius cultivar O-4 contig14275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96574
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:13184 original size:80 final size:80
Alignment explanation
Indices: 13079--13238 Score: 320
Period size: 80 Copynumber: 2.0 Consensus size: 80
13069 TTCATTTTCG
13079 ACGAGAAATTTGGTTTGGGCACTCTTTATGGGAAGCGGCCAACTAGCCCTGTTGCCAACTAATGC
1 ACGAGAAATTTGGTTTGGGCACTCTTTATGGGAAGCGGCCAACTAGCCCTGTTGCCAACTAATGC
13144 TGTGGTGGATAATGT
66 TGTGGTGGATAATGT
13159 ACGAGAAATTTGGTTTGGGCACTCTTTATGGGAAGCGGCCAACTAGCCCTGTTGCCAACTAATGC
1 ACGAGAAATTTGGTTTGGGCACTCTTTATGGGAAGCGGCCAACTAGCCCTGTTGCCAACTAATGC
13224 TGTGGTGGATAATGT
66 TGTGGTGGATAATGT
13239 TCTCTACTGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (80 bp):
ACGAGAAATTTGGTTTGGGCACTCTTTATGGGAAGCGGCCAACTAGCCCTGTTGCCAACTAATGC
TGTGGTGGATAATGT
Found at i:16641 original size:1 final size:1
Alignment explanation
Indices: 16635--16662 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
16625 TTTCGTAAAT
16635 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
16663 GAAGTGGGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:21665 original size:21 final size:22
Alignment explanation
Indices: 21639--21680 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
21629 AAGTAACACG
21639 ATTTAAGTAA-TGATATTTGAT
1 ATTTAAGTAATTGATATTTGAT
21660 ATTTAAGTAATTTGATATTTG
1 ATTTAAGTAA-TTGATATTTG
21681 GATCTGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.53
23 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (22 bp):
ATTTAAGTAATTGATATTTGAT
Found at i:25884 original size:13 final size:14
Alignment explanation
Indices: 25866--25895 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
25856 TATTTCTGCA
25866 AAAAATAAA-AAAT
1 AAAAATAAATAAAT
25879 AAAAATAAATAAAT
1 AAAAATAAATAAAT
25893 AAA
1 AAA
25896 TAAATCCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATAAATAAAT
Found at i:35695 original size:24 final size:24
Alignment explanation
Indices: 35667--35744 Score: 129
Period size: 24 Copynumber: 3.2 Consensus size: 24
35657 GCCATGTGCG
* *
35667 GGATATGGATATTGCGGAAAATAT
1 GGATATGGATATCGGGGAAAATAT
*
35691 CGATATGGATATCGGGGAAAATAT
1 GGATATGGATATCGGGGAAAATAT
35715 GGATATGGATATCGGGGAAAATAT
1 GGATATGGATATCGGGGAAAATAT
35739 GGATAT
1 GGATAT
35745 TGGGGAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.37, C:0.05, G:0.31, T:0.27
Consensus pattern (24 bp):
GGATATGGATATCGGGGAAAATAT
Found at i:35738 original size:18 final size:18
Alignment explanation
Indices: 35717--35751 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
35707 GAAAATATGG
35717 ATATGGATATCGGGGAAA
1 ATATGGATATCGGGGAAA
*
35735 ATATGGATATTGGGGAA
1 ATATGGATATCGGGGAA
35752 TATGGAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.34, T:0.26
Consensus pattern (18 bp):
ATATGGATATCGGGGAAA
Found at i:35755 original size:16 final size:17
Alignment explanation
Indices: 35717--35757 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
35707 GAAAATATGG
35717 ATATGGATATCGGGGAAA
1 ATATGGATATCGGGG-AA
*
35735 ATATGGATATTGGGG-A
1 ATATGGATATCGGGGAA
35751 ATATGGA
1 ATATGGA
35758 AGTTGGTGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
18 14 0.64
ACGTcount: A:0.37, C:0.02, G:0.34, T:0.27
Consensus pattern (17 bp):
ATATGGATATCGGGGAA
Found at i:36559 original size:20 final size:20
Alignment explanation
Indices: 36536--36576 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36526 TTTACTTTAG
36536 AATTTTATTATTTCTTAAAT
1 AATTTTATTATTTCTTAAAT
36556 AATTTTATTATTTCTTAAAT
1 AATTTTATTATTTCTTAAAT
36576 A
1 A
36577 TCTTTCCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
AATTTTATTATTTCTTAAAT
Found at i:59168 original size:6 final size:6
Alignment explanation
Indices: 59157--59197 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
59147 GGCCGAAATA
59157 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTT
59198 AATATACTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TATTTT
Found at i:63213 original size:30 final size:30
Alignment explanation
Indices: 63179--63239 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
63169 CCTATAATTC
*
63179 AATGTCACTAGGATAGTGAATTCTAAAACT
1 AATGTCACTAGGATAGTGAATCCTAAAACT
63209 AATGTCACTAGGATAGTGAATCCTAAAACT
1 AATGTCACTAGGATAGTGAATCCTAAAACT
63239 A
1 A
63240 CGTGAAGGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (30 bp):
AATGTCACTAGGATAGTGAATCCTAAAACT
Found at i:74854 original size:324 final size:327
Alignment explanation
Indices: 74282--75221 Score: 1350
Period size: 324 Copynumber: 2.9 Consensus size: 327
74272 CCCGGCTCAG
* * * * * * *
74282 TTTTGAATCATTTTTGGCATCAAAACTCCTTGAAATATCTATATTCATTTAATAAAAAATTAGTC
1 TTTTGCATGATTTTTCGCGTCAAAACTCCTTGAAATATCTATATTCATATAATAAAAACTTAGCC
*
74347 ACATTGCATTTAAGGATTTGTTTTTACAAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAA
66 ACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAA
* ** * *
74412 TTTAGAAAAAATATGAAAATTGATATTAAAAGCGTGAAAAGTCCC-CCAATCTTTTTGTCGTTTA
131 TTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAA-TCCCTCCAATCTTTTTGGCGTTAA
*
74476 ATTATATATATTTTATGAGTATTTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCATTTTTTG
195 ATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTG
*
74541 CAAAATTTTAGCCAAAATTATGT-A-CACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCAAAT
260 CAAAATTTTAGCCAAAATCATGTAATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCAAAT
74604 AAA
325 AAA
* * * *
74607 TTTTGTATGA-TTTTCGACGTCAAGACTCCCTGAAATATCTATATTCATCTAATAAAAACTTAGC
1 TTTTGCATGATTTTTCG-CGTCAAAACTCCTTGAAATATCTATATTCATATAATAAAAACTTAGC
74671 CACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAG-AATTA
65 CACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTA
* *
74735 ATTCAGAAAAAATATGAAAAACGATATTAAAATCGTGAAAATCCCTCCAAGCTTTTTGGCGTTAA
130 ATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAATCCCTCCAATCTTTTTGGCGTTAA
* * * *
74800 ATTATATATATTATATGAGTATTTTATCCAGAGATTGAGGAAAAATTTTTCGCGGTCAGTTTTTG
195 ATTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTG
* * **
74865 CAAAATTTTCGCCAAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCTG
260 CAAAATTTTAGCCAAAATCATGT-A--ATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCA
** * *
74930 GCTCAG
322 AATAAA
* * *
74936 TTTTGCATGATTTTTTGCGTCAAAACTCCTTGAAATATTTATATTCATATAATAAAAACTTAGGC
1 TTTTGCATGATTTTTCGCGTCAAAACTCCTTGAAATATCTATATTCATATAATAAAAACTTAGCC
* * * * * *
75001 ACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGCAGCTTGCTCCAATTTAATGAGAAATTAA
66 ACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAA
* *
75066 TTCAGAAAAAATATGAAAAACGTTATTAAAAGCGTGAAAATCTCTCCAATCTTTTTGGCGTTAAA
131 TTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAATCCCTCCAATCTTTTTGGCGTTAAA
75131 TCATATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTT
196 T--TATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGCGGTCA-TTTTT
* * *
75196 TGCAAAGTTTTAGCTAAAATCGTGTA
258 TGCAAAATTTTAGCCAAAATCATGTA
75222 CTAACTGAAT
Statistics
Matches: 548, Mismatches: 55, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
323 4 0.01
324 143 0.26
325 107 0.20
328 1 0.00
329 140 0.26
330 73 0.13
332 54 0.10
333 26 0.05
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (327 bp):
TTTTGCATGATTTTTCGCGTCAAAACTCCTTGAAATATCTATATTCATATAATAAAAACTTAGCC
ACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAA
TTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAATCCCTCCAATCTTTTTGGCGTTAAA
TTATATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGC
AAAATTTTAGCCAAAATCATGTAATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCAAATA
AA
Found at i:76113 original size:336 final size:333
Alignment explanation
Indices: 75491--76723 Score: 1800
Period size: 336 Copynumber: 3.7 Consensus size: 333
75481 CAACATCAAG
* * * * *
75491 ATCACGGTTTTTGGCTAAAAACGCGTTTTGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCATC
1 ATCACGGTTTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATCATTTTTGGCGTC
* * * *
75556 AAGACTCCTTGAAACATCTATATTCATCTAATAAAAACTTAGCCACAATGCATTTAAGGATTTGT
66 AAGACTCCTTGAAATATCTATATTCATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTTGT
*
75621 TTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAAC
131 TTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAAT
**
75686 GATATTAAAAGCGTGAAAAGCCCTCCAAT-TTGTTTGGATTTAAATTATATGTATTTTATGAGTA
196 GATATTAAAAGCGTGAAAAGCCCTCCAATCTT-TTTGGCGTTAAATTATATGTATTTTATGAGTA
* * * * *
75750 TTTTATCCAAAAATTAAGGACAAATTTTTCGCGATCATATTTTGGAAAAATTTTAGTCAAAATCG
260 TTTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCAT-TTTTTGCAAAATTTTAGCCAAAATCG
75815 TAG-ACTAACC
324 T-GTACTAACC
* * *
75825 AATCACGGTTTTTTGGCTAAAAACGCATTTCGGGGCCCCAGCTCAGTTTTGCATCATTTTTTGTG
1 -ATCACGG-TTTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATCATTTTTGGCG
*
75890 TCAAGACTCCTTGAAATATCTATATTTATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTT
64 TCAAGACTCCTTGAAATATCTATATTCATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTT
* *
75955 GTTTTTACAAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAA
129 GTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAA
* * * *
76020 ATGATATTAAAAGCGTGAAAAGTCTTCCAATCTTTTTGGTGTTAAATTATATCTATTTTATGAGT
194 ATGATATTAAAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATATGTATTTTATGAGT
76085 ATTTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCAGTTTTTTGCAAAATTTTAGCCAAAATC
259 ATTTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCA-TTTTTTGCAAAATTTTAGCCAAAATC
*
76150 GTGTATTAACC
323 GTGTACTAACC
* * * * * *
76161 ATTACGGTTTTTGGCTAAAAACGCGTTTTGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCGTC
1 ATCACGGTTTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATCATTTTTGGCGTC
* * * *
76226 AAGACTCCTTAAAATATATACATTCATTTAATAAAAACTTAGCCACATTGCATTTAAGGATTTGT
66 AAGACTCCTTGAAATATCTATATTCATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTTGT
* *
76291 TTTTACGAGCATTTGAATCTTGTTTCGATTTTATTA-AAATTAATTCAG-AAACA-AT-----AT
131 TTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAAT
*
76348 G------AAAGCGTGAAAAGCCCTCCAATCTTTTTGACGTTAAATTATATGTATTTTATGAGTAT
196 GATATTAAAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATATGTATTTTATGAGTAT
76407 TTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTG
261 TTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTG
76472 TACT-ACC
326 TACTAACC
* * **
76479 ATCACGATTTTTGGCTAAAAACGCATTTCGGGACCCCGGCTCAAATTTGCATCATTTTTGGCGTC
1 ATCACGGTTTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATCATTTTTGGCGTC
* *
76544 AAGACTCCTTGAAATATCTATAGTT-ATTTAATAAAAAATTAGTCATATTGCATTTAAGGATTTG
66 AAGACTCCTTGAAATATCTATA-TTCATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTTG
*
76608 TTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTTAGAAAAAATATGAAAAA
130 TTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAA
* * * * *
76673 TGATATTAAATGCGTGAAAAGTCTTCCAATCTTTTTAGCATTAAATTATAT
195 TGATATTAAAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATAT
76724 ATATGGATGT
Statistics
Matches: 803, Mismatches: 76, Indels: 41
0.87 0.08 0.04
Matches are distributed among these distances:
318 149 0.19
319 45 0.06
320 93 0.12
321 2 0.00
326 6 0.01
331 2 0.00
332 41 0.05
333 11 0.01
334 144 0.18
335 14 0.02
336 293 0.36
337 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (333 bp):
ATCACGGTTTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATCATTTTTGGCGTC
AAGACTCCTTGAAATATCTATATTCATTTAATAAAAAATTAGCCACATTGCATTTAAGGATTTGT
TTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAAT
GATATTAAAAGCGTGAAAAGCCCTCCAATCTTTTTGGCGTTAAATTATATGTATTTTATGAGTAT
TTTATCCAAAAATTAAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAATTTTAGCCAAAATCGTG
TACTAACC
Found at i:77221 original size:173 final size:173
Alignment explanation
Indices: 76932--77276 Score: 577
Period size: 173 Copynumber: 2.0 Consensus size: 173
76922 TGAAAGACCC
* * * * * *
76932 AGGAAATTTATCAAAGGCCCATTTTGAGAATCGATGTGGAGGCTGCATTTGAATTTTTTTTGTCT
1 AGGAAATTTATCAAAGACCCATTTTGAGAATCGATGAGAAGGCTCCATTTGAACTTCTTTTGTCT
76997 TTTTCTGTCTTTTCTCACTTGCCAAATTACTAAGAAGACCCTAGGTTAGTTTCTTACCCTTGAGC
66 TTTTCTGTCTTTTCTCACTTGCCAAATTACTAAGAAGACCCTAGGTTAGTTTCTTACCCTTGAGC
77062 CCTTTTTTGTAATTATCCTTTCCTTTCACATAAATGTTATAAA
131 CCTTTTTTGTAATTATCCTTTCCTTTCACATAAATGTTATAAA
*
77105 AGGAAATTTA-CGAAAGACCCCTTTTGAGAATCGATGAGAAGGCTCCATTTGAACTTCTTTTGTC
1 AGGAAATTTATC-AAAGACCCATTTTGAGAATCGATGAGAAGGCTCCATTTGAACTTCTTTTGT-
77169 CTTTTT-TGTCTTTTCTCACTTGCCAAATTACTAAGAAGACCCTAGGTTAGTTTCTTACCCTTGA
64 CTTTTTCTGTCTTTTCTCACTTGCCAAATTACTAAGAAGACCCTAGGTTAGTTTCTTACCCTTGA
* *
77233 GTCCTTTTTTGTAATTATCCTTTCCTTTCATATAAATGTTATAA
129 GCCCTTTTTTGTAATTATCCTTTCCTTTCACATAAATGTTATAA
77277 TAAATCTTAT
Statistics
Matches: 161, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
172 1 0.01
173 154 0.96
174 6 0.04
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.41
Consensus pattern (173 bp):
AGGAAATTTATCAAAGACCCATTTTGAGAATCGATGAGAAGGCTCCATTTGAACTTCTTTTGTCT
TTTTCTGTCTTTTCTCACTTGCCAAATTACTAAGAAGACCCTAGGTTAGTTTCTTACCCTTGAGC
CCTTTTTTGTAATTATCCTTTCCTTTCACATAAATGTTATAAA
Found at i:84659 original size:5 final size:5
Alignment explanation
Indices: 84649--84691 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
84639 GTTTGGTGAA
*
84649 TTTTG TTTTG TTTTG TTTTG -TTT- TTTTG TTTTTT TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG TTTT
84692 CCCTTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 6 0.18
5 23 0.70
6 4 0.12
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:84677 original size:18 final size:19
Alignment explanation
Indices: 84654--84691 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
84644 GTGAATTTTG
84654 TTTTG-TTTTGTTTTGTTT
1 TTTTGTTTTTGTTTTGTTT
*
84672 TTTTGTTTTTTTTTTGTTT
1 TTTTGTTTTTGTTTTGTTT
84691 T
1 T
84692 CCCTTAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (19 bp):
TTTTGTTTTTGTTTTGTTT
Found at i:86757 original size:16 final size:16
Alignment explanation
Indices: 86736--86770 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
86726 TTTAAGAATA
86736 TTTAATTT-TTTTAACC
1 TTTAATTTGTTTT-ACC
86752 TTTAATTTGTTTTACC
1 TTTAATTTGTTTTACC
86768 TTT
1 TTT
86771 TCTATAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.20, C:0.11, G:0.03, T:0.66
Consensus pattern (16 bp):
TTTAATTTGTTTTACC
Found at i:88414 original size:20 final size:20
Alignment explanation
Indices: 88348--88414 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
88338 CATTGAGGGC
88348 CAATGTGAATTAAGGCAAGTT
1 CAATGTG-ATTAAGGCAAGTT
* * *
88369 CAATGTCATT-TGGTAAAGTT
1 CAATGTGATTAAGG-CAAGTT
**
88389 GGATGTGATTAAGGCAAGTT
1 CAATGTGATTAAGGCAAGTT
88409 CAATGT
1 CAATGT
88415 CATTTGGATG
Statistics
Matches: 34, Mismatches: 10, Indels: 5
0.69 0.20 0.10
Matches are distributed among these distances:
19 2 0.06
20 24 0.71
21 8 0.24
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (20 bp):
CAATGTGATTAAGGCAAGTT
Found at i:88440 original size:32 final size:32
Alignment explanation
Indices: 88387--88613 Score: 420
Period size: 32 Copynumber: 7.1 Consensus size: 32
88377 TTTGGTAAAG
88387 TTGGATGTG-ATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
88418 TTGGATGTGAATGAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
88450 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
88482 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
88514 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
88546 TTGGATGTGAATTAAGGCAAGTTCAATGTTAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
88578 TTGGATGTGAATTAAGGCAAGTTCAATGTTAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
88610 TTGG
1 TTGG
88614 GAAAGTTAAA
Statistics
Matches: 192, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
31 9 0.05
32 183 0.95
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.35
Consensus pattern (32 bp):
TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
Found at i:89824 original size:25 final size:27
Alignment explanation
Indices: 89774--89829 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 27
89764 TTTTATAGTG
*
89774 TTTTAAGCCATTTTTGTATTATAGGC-
1 TTTTAAGACATTTTTGTATTATAGGCA
89800 TTTTAAGACA-TTTTGTATT-TCAGGCA
1 TTTTAAGACATTTTTGTATTAT-AGGCA
89826 TTTT
1 TTTT
89830 GAAAAATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 1 0.04
25 13 0.48
26 13 0.48
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (27 bp):
TTTTAAGACATTTTTGTATTATAGGCA
Found at i:89829 original size:26 final size:26
Alignment explanation
Indices: 89766--89818 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
89756 CTGAAACATT
*
89766 TTATAGTG-TTTTAAGCCATTTTTGTA
1 TTATAG-GCTTTTAAGACATTTTTGTA
89792 TTATAGGCTTTTAAGACA-TTTTGTA
1 TTATAGGCTTTTAAGACATTTTTGTA
89817 TT
1 TT
89819 TCAGGCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.53
Consensus pattern (26 bp):
TTATAGGCTTTTAAGACATTTTTGTA
Found at i:91319 original size:435 final size:434
Alignment explanation
Indices: 90451--91323 Score: 1541
Period size: 435 Copynumber: 2.0 Consensus size: 434
90441 CAAGCAATTT
*
90451 ATTTGGAAAAATCATGCCAATTAATCAATATTTTGTTGTTTTTCTACTGTAATTAAACAAGGTCA
1 ATTTAGAAAAATCATGCCAATTAATCAATATTTTGTTGTTTTTCTACTGTAATTAAACAAGGTCA
*
90516 CTGATTGGAAAAATCGAAATTAAAATGAACAATCATATTCGGCTGCAATTTTAGCCAAATCGAGA
66 CTAATTGGAAAAATCGAAATTAAAATGAACAATCATATTCGGCTGCAATTTTAGCCAAATCGAGA
* *
90581 ATTTGATAGGTGTATTGTGACTTCCCATGGTTTAATGTAAACTAAGGGTGAGGTCCAATGTAAAT
131 ATTTGATAGGTGTATTGAGACTTCCCATGGTTTAATGTAAACTAAGGGTGAGGCCCAATGTAAAT
90646 ATGATCCAGTCCAATTTTATGTAAAAACTGGCCCATTTATACTTTTGGCCCAAATTATACAAAAA
196 ATGATCCAGTCCAATTTTATGTAAAAACTGGCCCATTTATACTTTTGGCCCAAATTATACAAAAA
* *
90711 TATTTAATCCCTAAAATTTGGCCCATTTTAGGCCTAGTGCTTGACCAATTTTTGCTTAGTGTAAA
261 TATTTAATCCCTAAAATTTGGCCCATTATAGGCCCAGTGCTTGACCAATTTTTGCTTAGTGTAAA
* *
90776 CAAATATGTTGCCCGATTAGTACCCAATTAAAGTGAATATGAGGCCCATTTTTATATTGATTCAA
326 CAAATACGTTGCCCGATTAGTACCCAATTAAAGTGAATATGAGGACCATTTTTATATTGATTCAA
* *
90841 GTTTAGTTTCAGCAAAATTTGAGCCTATTAAAATTAAAGAAACA
391 GTTTAATTTCAGCAAAATTTGAGCATATTAAAATTAAAGAAACA
* *
90885 ATTTAGAAAAATCATGCCAATTAATCAATGTTTTGTTGTTTTTCTACTGTAATTAAACAGGGTCA
1 ATTTAGAAAAATCATGCCAATTAATCAATATTTTGTTGTTTTTCTACTGTAATTAAACAAGGTCA
*
90950 CTAATTGGAAAAATCGAAATTAAAATGAACAATCATATTCGGTTGCAATTTTAGCCAAATCGAGA
66 CTAATTGGAAAAATCGAAATTAAAATGAACAATCATATTCGGCTGCAATTTTAGCCAAATCGAGA
*
91015 ATTTGAT-GGATGTATTGAGACTTCCCATGGTTTAATGTAAACTAATGGTGAGGCCCAATGTAAA
131 ATTTGATAGG-TGTATTGAGACTTCCCATGGTTTAATGTAAACTAAGGGTGAGGCCCAATGTAAA
*
91079 TATGATCCAGTCCAATTTTTTTGTAAAAACTGGCCCATTTATACTTTTGGCCCAAATTATACAAA
195 TATGATCCAGTCCAA-TTTTATGTAAAAACTGGCCCATTTATACTTTTGGCCCAAATTATACAAA
* *
91144 AATATTTAATCCTTAAAATTTGGCCCATTATAGGCCCAGTGCTTGACCACTTTTTGCTTAGTGTA
259 AATATTTAATCCCTAAAATTTGGCCCATTATAGGCCCAGTGCTTGACCAATTTTTGCTTAGTGTA
*
91209 GACAAATACGTTGCCCGATTAGTACCCAATTAAAGTGAATATGAGGACCATTTTTATATTGATTC
324 AACAAATACGTTGCCCGATTAGTACCCAATTAAAGTGAATATGAGGACCATTTTTATATTGATTC
* *
91274 AGGTTTAATTTCAGCAAAATTTGAGCATATTAAAATTAGAGAAACA
389 AAGTTTAATTTCAGCAAAATTTGAGCATATTAAAATTAAAGAAACA
91320 ATTT
1 ATTT
91324 GGGTCTAAAT
Statistics
Matches: 417, Mismatches: 20, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
433 2 0.00
434 198 0.47
435 217 0.52
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (434 bp):
ATTTAGAAAAATCATGCCAATTAATCAATATTTTGTTGTTTTTCTACTGTAATTAAACAAGGTCA
CTAATTGGAAAAATCGAAATTAAAATGAACAATCATATTCGGCTGCAATTTTAGCCAAATCGAGA
ATTTGATAGGTGTATTGAGACTTCCCATGGTTTAATGTAAACTAAGGGTGAGGCCCAATGTAAAT
ATGATCCAGTCCAATTTTATGTAAAAACTGGCCCATTTATACTTTTGGCCCAAATTATACAAAAA
TATTTAATCCCTAAAATTTGGCCCATTATAGGCCCAGTGCTTGACCAATTTTTGCTTAGTGTAAA
CAAATACGTTGCCCGATTAGTACCCAATTAAAGTGAATATGAGGACCATTTTTATATTGATTCAA
GTTTAATTTCAGCAAAATTTGAGCATATTAAAATTAAAGAAACA
Found at i:92377 original size:334 final size:334
Alignment explanation
Indices: 91703--93937 Score: 3180
Period size: 335 Copynumber: 6.7 Consensus size: 334
91693 AGTAACGTTT
* *
91703 ATATAATTCAATGCCAAAAATATTTTA-GGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
*
91767 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTTGTAAAAATAAATCCGTAAAT
65 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAAT
* *
91832 GCGTTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCATTCTGCCAAAAAT
130 GCATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAAT
* *
91897 CATGCAAAACTGAGCCAGGGCCTCGAAACGCATTTTTAGCCAAAAA-CTGTGATGGTTAGTACAC
195 CATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATC-GTGATGGTTAGTACAC
*
91961 GATTTCGGCTAAAATTTTGTAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAATAC
259 GATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAATAC
92026 TCAGAAAAATC
324 TCAGAAAAATC
*
92037 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
* * * * * * *
92102 TTCCGAACTGATTTTCTAATTTAAATC-ATAAGAATATTCAGATGCTCGTAAAAACAAATCCGTA
65 TTCTGAATTTA-TTTCTAA-TTAAATCGA-AACAAGATTCAGATACTCGTAAAAATAAATCCGTA
* * * * * * * *
92166 GA-GCCAATGTGGGT-A-AGATTTGGTTAGATGAATATAGGTATTTTGAGAAATCTTTCTGTCAA
127 AATG-CATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAA
* *
92228 AAATCATGCAAAACTGAGTCAGGGCCCCGAAACACATTTTTAGCCAAAAATCGTGATGGTT-TTA
191 AAATCATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTA
** *
92292 CACTTTTTCGGCTAAAATATTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAA
256 CACGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAA
92357 TACTCAGAAAAATC
321 TACTCAGAAAAATC
92371 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTT
* *
92436 TTCTGAATTTATTTCTAATTAAATCGAAATAAGATTCTGATAC-CTGTAAAAATAAATCCGTAAA
65 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTC-GTAAAAATAAATCCGTAAA
* * *
92500 TGCATTGTGGTTGAGAGATTTGATTAGATGAATATAGATATTTCGACAAGTCTTTCTGGCAAAAA
129 TGCATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAA
* * *
92565 TCATTCAAAACTGAGTCAAGGCCCCGAAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACAC
194 TCATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACAC
* *
92630 GATTTCGGCTAAAATTTTGCAAAAAATTGACCCAAAAAGTTTTTCCCCAATTCTTTCCACAATAC
259 GATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAATAC
*
92695 TTAGAAAAATC
324 TCAGAAAAATC
*
92706 ATATAATTCAACGGCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
*
92770 TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTA-TTGTAAAAATAAATCCGTAAAT
66 TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGA-TACTCGTAAAAATAAATCCGTAAAT
*
92834 GCATTGTGGCTGAGAGATTTGATTA-ATTGAATATAGATATTTCGAGAAGTCTTTCTGCTAAAAA
130 GCATTGTGGCTGAGAGATTTGATTAGA-TGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAA
* * * * *
92898 TCATGCAAAACTGAGTCAGGGCCCCGAAACACAATTTTAGCCAAAAAACCGTGATGGTTAGCATA
194 TCATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCC-AAAAATCGTGATGGTTAGTACA
* * ** *
92963 CGATTTCGGCTACAATTTTGCAAAAACACTGATTCGAAAAGCTTTTCCCCAATTTTTTGCCACAA
258 CGATTTCGGCTAAAATTTTGCAAAAA-ATTGACCCGAAAAGTTTTTCCCCAATTTTTT-CCACAA
93028 TACTCAGAAAAATC
321 TACTCAGAAAAATC
* * * * * *
93042 ATATAATTCAATGCCAAAACTATTTTAGGGGTTTTCACGCTTTTGATTTCGTTTTTCAAATTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTC-CATTTTT
* * * *
93107 TTCTAAATTTATTTCAAAATAAATCGAAACAAGATTCAGATACTTGTAAAAATAAATCCGTAAAT
65 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAAT
*
93172 GCATTGTGGCTGAGAGATTTGATTAGATGAAGATAGATATTTCGAGAAGTCTTTCTGCCAAAAAT
130 GCATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAAT
* * *
93237 CATGCAAAACTGAGCCAGGGCCTCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACG
195 CATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* * *
93302 ATTTCGGCTAAAATTTTGCAAAAAACTGACCCGAAAATTTTTTCACCAATTTTTTTCCACAATAC
260 ATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAA-TTTTTTCCACAATAC
* *
93367 TCTGAAAAAAC
324 TCAGAAAAATC
93378 ATATAATTCAACGCCTAAAA-TATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTT
1 ATATAATTCAACGCC-AAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTT
* * * * * * * *
93442 TTCCGAACTGATTTCTAATTAAATC-ATAAGAATATTCAGATGCTCGTAAAAACAAATCCGTAGA
65 TTCTGAATTTATTTCTAATTAAATCGA-AACAAGATTCAGATACTCGTAAAAATAAATCCGTAAA
* * * * * * *
93506 -GCCAATGTGGGT-A-AGATTTGGTTAGATGAATATAGGTATTTTGAGAAATCTTTCTGCCAACA
129 TG-CATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAA
*
93568 ATCATGCAAAACTGAGTCAGGGCCCTGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACA
193 ATCATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACA
*
93633 CGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGGAAAGTTTTTCCCCAATTTTTTCCACAATA
258 CGATTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAATA
93698 CTCAGAAAAATC
323 CTCAGAAAAATC
*
93710 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTACA-TTTTT
1 ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
* *
93774 TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTAAAAACAAATCCGTAAA-G
66 TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATG
* * * * * *
93838 CCAATGTTGG-T--GAGATATGGTTAGATGAATATATATATATATTTGTAGAAGTCTTTTTGCCA
131 -CATTG-TGGCTGAGAGATTTGATTAGATG-A-ATATAGATAT-TTCG-AGAAGTCTTTCTGCCA
* * * *
93900 AAAATCATGCCAAACTGAGCCAGAGCCTCGAAACGCAT
190 AAAATCATGCAAAACTGAGTCAGGGCCCCGAAACGCAT
93938 ACTCAGAAAA
Statistics
Matches: 1704, Mismatches: 163, Indels: 67
0.88 0.08 0.03
Matches are distributed among these distances:
331 86 0.05
332 127 0.07
333 327 0.19
334 325 0.19
335 408 0.24
336 166 0.10
337 102 0.06
338 162 0.10
339 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (334 bp):
ATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT
TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAATG
CATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATC
ATGCAAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGA
TTTCGGCTAAAATTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTCCACAATACTC
AGAAAAATC
Found at i:94118 original size:241 final size:239
Alignment explanation
Indices: 93695--94146 Score: 705
Period size: 241 Copynumber: 1.9 Consensus size: 239
93685 TTTTTCCACA
93695 ATACTCAGAAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATC
1 ATACTCAGAAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATC
* *
93760 GTTTTTACATTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTAAAAA
66 GTTTTTACATTTTTTCTGAATTTATTTCTAAATAAATCGAAACAAGATTCAGATACTCGTAAAAA
*
93825 CAAATCCGTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATATATTTGTAGAAGT
131 CAAATCCGTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATAT-TTCG-AGAAGT
*
93890 CTTTTTGCCAAAAATCATGCCAAACTGAGCCAGAGCCTCGAAACGC
194 CTTTCTGCCAAAAATCATGCCAAACTGAGCCAGAGCCTCGAAACGC
* * *
93936 ATACTCAGAAAAATCATATAATTCAATGCCAAAACTATTTTAGGGTTTTTCACGCTTTTCATATC
1 ATACTCAGAAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATC
* * *
94001 GTTTTTCCATTTTTTCTGAATTTATTTCTAAATAAATCGAAACAAGATTGAGATACTTGTAAAAA
66 GTTTTTACATTTTTTCTGAATTTATTTCTAAATAAATCGAAACAAGATTCAGATACTCGTAAAAA
* * *
94066 TAAATCCGTAAATG-CATTG-TGGCTGAGAGATTTGGTTAGATG-A-ATATATATATTTCGAGAA
131 CAAATCCGTAAA-GCCAATGTTGG-T--GAGATATGGTTAGATGAATATATATATATTTCGAGAA
94127 GTCTTTCTGCCAAAAATCAT
192 GTCTTTCTGCCAAAAATCAT
94147 ACAAAACTAA
Statistics
Matches: 194, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
239 23 0.12
240 6 0.03
241 148 0.76
242 2 0.01
243 15 0.08
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (239 bp):
ATACTCAGAAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATC
GTTTTTACATTTTTTCTGAATTTATTTCTAAATAAATCGAAACAAGATTCAGATACTCGTAAAAA
CAAATCCGTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATATTTCGAGAAGTCT
TTCTGCCAAAAATCATGCCAAACTGAGCCAGAGCCTCGAAACGC
Found at i:95045 original size:292 final size:282
Alignment explanation
Indices: 94506--95060 Score: 887
Period size: 292 Copynumber: 1.9 Consensus size: 282
94496 TCAGTGCCAT
* *
94506 GAAACACATTTTTAGCCAAAAATCGTGATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAA
1 GAAACACATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
* *
94571 ACTTACCCGAAAAGTTTTTCCCCAATTTTTGACCACAATACTCAGAAAAATCATATAATTCAATG
66 ACTGACCCGAAAAGTTTTTCCCCAATTTTTGACCACAATACTCAGAAAAATCATATAATTCAACG
* ** *
94636 CCAAAACTATTTTATGGTTTTTCACGCTTCTAATATCGTTTTCCATGAATTTATTTCTAATTAAA
131 CCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTAACATGAATTTATTTATAATTAAA
*
94701 TCATAAAAAGATTCAGATGCTCGTAAAAACAAATCCGTAAAGCCAATGTTGGTGAGATTTGGTTA
196 TCATAAAAAGATTCAGATGCTCGTAAAAACAAATCCGTAAAGCCAATGTTGGTGAGATATGGTTA
94766 GATCAAACTGAGTTAGGGCCCC
261 GATCAAACTGAGTTAGGGCCCC
*
94788 GAAACTCATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
1 GAAACACATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
* *
94853 ACTGACTCGTAAAAGTTTTTCCCCAATTTTTTTG-CCACAATACTCCGAAAAATCATATAATTCA
66 ACTGACCCG-AAAAGTTTTTCCCCAA--TTTTTGACCACAATACTCAGAAAAATCATATAATTCA
94917 ACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTAACATTTTTTTCTGAATTTAT
128 ACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTAACA--------TGAATTTAT
*
94982 TTATAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGTAAAGCCAATGTTGGTG
185 TTATAATTAAATCATAAAAAGATTCAGATGCTCGTAAAAACAAATCCGTAAAGCCAATGTTGGTG
95047 AGATATGGTTAGAT
250 AGATATGGTTAGAT
95061 GAATATATAT
Statistics
Matches: 249, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
282 69 0.28
283 16 0.06
284 73 0.29
285 6 0.02
292 85 0.34
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (282 bp):
GAAACACATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
ACTGACCCGAAAAGTTTTTCCCCAATTTTTGACCACAATACTCAGAAAAATCATATAATTCAACG
CCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCGTTTAACATGAATTTATTTATAATTAAA
TCATAAAAAGATTCAGATGCTCGTAAAAACAAATCCGTAAAGCCAATGTTGGTGAGATATGGTTA
GATCAAACTGAGTTAGGGCCCC
Found at i:95381 original size:332 final size:332
Alignment explanation
Indices: 94770--96467 Score: 2446
Period size: 334 Copynumber: 5.1 Consensus size: 332
94760 TGGTTAGATC
* * *
94770 AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCG
1 AAACTGAGCTAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
* *
94835 GCTAAAATTTTGCAAAAAACTGACTCGTAAAAGTTTTTCCCCAATTTTTTTGCCACAATACTCCG
66 GCTAAAATTTTGCAAAAAACTGACCCG-AAAAGTTTTTCCCCAA-TTTTTTGCCACAATACTCAG
* **
94900 AAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCG-TTTAAC
129 AAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
*
94964 ATTTTTTTCTGAATTTATTTATAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCC
194 ATTTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCC
*
95029 GTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATTTCTAGAAGTCTTTCTGCCAA
259 GTAAAGCCAAT-TTGGTGAGATTTGGTTAGATGAATATATATATTTCTAGAAGTCTTTCTGCCAA
*
95094 AAATCATGCC
323 AAATCATGCA
* * *
95104 AAACTGAGCTAGGGCCTCGAAACGCATTTTTAACCAAAAACCGTGATGGTTAGTACACGATTTCG
1 AAACTGAGCTAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
* *
95169 GCTTAAATTTTGCAAAAACCTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAA
66 GCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAA
* *
95234 AAACCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTGACGCTTCTAATATCGTTTTTCCAT
131 AAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAT
* *
95299 TTTTTT-TGAATTTATTTCTAACTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCTGT
196 TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
* *
95363 AAAGCCAATTTGGGTGAGATTTGGTTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAA
261 AAAGCCAATTT-GGTGAGATTTGGTTAGATGAATATATATATTTCTAGAAGTCTTTCTGCCAAAA
*
95428 ATCGTGCA
325 ATCATGCA
* * * * *
95436 AAACTGAG-TCAGGGTCCCGAAACACATTTTTAGCCAAAATACCGTGATGGTTTGTACACTATTT
1 AAACTGAGCT-AGGGCCCCGAAACGCATTTTTAGCCAAAA-ATCGTGATGGTTAGTACACGATTT
* * * *
95500 CGGCTAAAATATTGCAAAAAAACCGATCCGAAAAGTTTTTCCCCAATTTTTTGCCATAATACTCA
64 CGGCTAAAATTTTGC-AAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCA
*
95565 GAAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTTTAATATCGTTTTTC
128 GAAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTC
* * * * * * *
95630 CGTTTTTTTCTGAATTTATTTCTAAATAAATCGA-AATAAGATTGAGATACTTGTAAAAATAAAT
193 CATTTTTTTCTGAATTTATTTCTAATTAAATC-ATAACAAGATTCAGATGCTCGTAAAAACAAAT
* * *
95694 CCGTAAATG-C-ATTGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTC
257 CCGTAAA-GCCAATT-TGG-T--GAGATTTGGTTAGATGAATATATATATTTCTAGAAGTCTTTC
95757 TGCCAAAAATCATGCA
317 TGCCAAAAATCATGCA
*
95773 AAACTGAGCCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGG--AGTACACGATTTCG
1 AAACTGAGCTAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
* * *
95836 GCTAAAATTTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTTCCACAGTACTCAGA
66 GCTAAAA-TTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGA
* * * * *
95901 AAAATCTTATAATTCAAC-ACAAAACTATTTTAGGGTTTTTCACGCTTTTAATATCG-TTTTCTA
130 AAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* * *
95964 TTTTTTTCGGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGGTCGTATAAACAAATCCG
195 TTTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCG
*
96029 TAAAGCCAATGTCGGTGAGATTTGGTTAGATGAATATATATATATTTCTAGAAGTCTTTCTGCCA
260 TAAAGCCAAT-TTGGTGAGATTTGGTTAGATG-A-ATATATATATTTCTAGAAGTCTTTCTGCCA
96094 AAAATCATGCA
322 AAAATCATGCA
** * * * *
96105 AAACTGAATTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTATTACACGATTTCA
1 AAACTGAGCTAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
* * *
96170 GCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCGCAAATTTTTTGCCACAACACTCAGAA
66 GCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAA
* * *
96235 AAATCATATAATTCAATGCCAAAAATATTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTACA-
131 AAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAT
96299 TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
196 TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
* * *
96364 AAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATATATTTGTAGAAGTCTTTTTGCC
261 AAAGCCAAT-TTGGTGAGATTTGGTTAGATG---A-ATATATATATTTCTAGAAGTCTTTCTGCC
*
96429 AAAAATCATGCC
321 AAAAATCATGCA
* * *
96441 AAACTGAGCCAGAGCCTCGAAACGCAT
1 AAACTGAGCTAGGGCCCCGAAACGCAT
96468 ACTCAGAAAA
Statistics
Matches: 1223, Mismatches: 115, Indels: 50
0.88 0.08 0.04
Matches are distributed among these distances:
330 15 0.01
331 6 0.00
332 375 0.31
333 170 0.14
334 429 0.35
335 65 0.05
336 72 0.06
337 91 0.07
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (332 bp):
AAACTGAGCTAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
GCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAA
AAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAT
TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
AAAGCCAATTTGGTGAGATTTGGTTAGATGAATATATATATTTCTAGAAGTCTTTCTGCCAAAAA
TCATGCA
Found at i:96048 original size:667 final size:664
Alignment explanation
Indices: 94770--96467 Score: 2543
Period size: 667 Copynumber: 2.5 Consensus size: 664
94760 TGGTTAGATC
*
94770 AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTAGTACACGATTTCG
1 AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTTGTACACGATTTCG
*
94835 GCTAAAATTTTGCAAAAAACTGACTCGTAAAAGTTTTTCCCCAATTTTTTTGCCACAATACTCCG
66 GCTAAAATTTTGCAAAAAACTGAC-CG-AAAAGTTTTTCCCCAA-TTTTTTGCCACAATACTCAG
* *
94900 AAAAATCATATAATTCAACGCCAAAACTATTTTAGGGTTTTTCACGCTTCTAATATCG-TTTAAC
128 AAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTAC
*
94964 ATTTTTTTCTGAATTTATTTATAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCC
193 -TTTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCC
*
95029 GTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATTTCTAGAAGTCTTTCTGCCAA
257 GTAAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATTTCGAGAAGTCTTTCTGCCAA
*
95094 AAATCATGCCAAACTGAGCTAGGGCCTCGAAACGCATTTTTAACCAAAAACCGTGATGGTTAGTA
322 AAATCATGCCAAACTGAGCCAGGGCCTCGAAACGCATTTTTAACCAAAAACCGTGATGG-TAGTA
* *
95159 CACGATTTCGGCTTAAATTTTGCAAAAACCTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACA
386 CACGATTTCGGCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACA
* *
95224 ATACTCAGAAAAACCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTGACGCTTCTAATATC
451 ATACTCAGAAAAACCATATAATTCAACGACAAAAATATTTTAGGGTTTTTCACGCTTCTAATATC
*
95289 GTTTTTCCATTTTTTTTGAATTTATTTCTAACTAAATCATAACAAGATTCAGATGCTCGTAAAAA
516 GTTTTTCCATTTTTTTGGAATTTATTTCTAACTAAATCATAACAAGATTCAGATGCTCGTAAAAA
* * *
95354 CAAATCTGTAAAGCCAATTTGGGTGAGATTTGGTTAGATG-A-ATATAGATATTTCGAGAAGTCT
581 CAAATCCGTAAAGCCAATGTCGGTGAGATTTGGTTAGATGAATATATAGATATTTCGAGAAGTCT
*
95417 TTCTGCCAAAAATCGTGCA
646 TTCTGCCAAAAATCATGCA
* * * * * *
95436 AAACTGAGTCAGGGTCCCGAAACACATTTTTAGCCAAAATACCGTGATGGTTTGTACACTATTTC
1 AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAA-ATCGTGACGGTTTGTACACGATTTC
* * *
95501 GGCTAAAATATTGCAAAAAAACCGATCCGAAAAGTTTTTCCCCAATTTTTTGCCATAATACTCAG
65 GGCTAAAATTTTGC-AAAAAACTGA-CCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAG
* *
95566 AAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTTTAATATCGTTTTTCC
128 AAAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTAC
* * * * * *
95631 GTTTTTTTCTGAATTTATTTCTAAATAAATCGA-AATAAGATTGAGATACTTGTAAAAATAAATC
193 -TTTTTTTCTGAATTTATTTCTAATTAAATC-ATAACAAGATTCAGATGCTCGTAAAAACAAATC
* * * *
95695 CGTAAATG-CATTG-TGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCT
256 CGTAAA-GCCAATGTTGG-T--GAGATATGGTTAGATGAATATATATATTTCGAGAAGTCTTTCT
* * * *
95758 GCCAAAAATCATGCAAAACTGAGCCAGGGCCCCGAAACGCATTTTTAGCCAAAAATCGTGATGG-
317 GCCAAAAATCATGCCAAACTGAGCCAGGGCCTCGAAACGCATTTTTAACCAAAAACCGTGATGGT
* *
95822 AGTACACGATTTCGGCTAAAATTTTTGCAAAAAATTGACCCGAAAAGTTTTTCCCCAATTTTTTT
382 AGTACACGATTTCGGCTAAAA-TTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTG
* * * * *
95887 CCACAGTACTCAGAAAAATCTTATAATTCAAC-ACAAAACTATTTTAGGGTTTTTCACGCTTTTA
446 CCACAATACTCAGAAAAACCATATAATTCAACGACAAAAATATTTTAGGGTTTTTCACGCTTCTA
* * *
95951 ATATCG-TTTTCTATTTTTTTCGGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGGTCG
511 ATATCGTTTTTCCATTTTTTT-GGAATTTATTTCTAACTAAATCATAACAAGATTCAGATGCTCG
* * *
96015 TATAAACAAATCCGTAAAGCCAATGTCGGTGAGATTTGGTTAGATGAATATATATATATTTCTAG
575 TAAAAACAAATCCGTAAAGCCAATGTCGGTGAGATTTGGTTAGATGAATATATAGATATTTCGAG
96080 AAGTCTTTCTGCCAAAAATCATGCA
640 AAGTCTTTCTGCCAAAAATCATGCA
*
96105 AAACTGAATTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTAT-TACACGATTTC
1 AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTT-TGTACACGATTTC
* * * *
96169 AGCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCGCAAATTTTTTGCCACAACACTCAGA
65 GGCTAAAATTTTGCAAAAAACTGA-CCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGA
* * *
96234 AAAATCATATAATTCAATGCCAAAAATATTTAAGGGTTTTTCACGCTTCTAATATCGTTTTTACA
129 AAAATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTACT
96299 TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
194 TTTTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGT
* *
96364 AAAGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATATATTTGTAGAAGTCTTTTTGCC
259 AAAGCCAATGTTGGTGAGATATGGTTAGATG-A-ATATATATAT-TTCG-AGAAGTCTTTCTGCC
*
96429 AAAAATCATGCCAAACTGAGCCAGAGCCTCGAAACGCAT
320 AAAAATCATGCCAAACTGAGCCAGGGCCTCGAAACGCAT
96468 ACTCAGAAAA
Statistics
Matches: 921, Mismatches: 90, Indels: 40
0.88 0.09 0.04
Matches are distributed among these distances:
664 14 0.02
665 3 0.00
666 200 0.22
667 366 0.40
668 165 0.18
669 173 0.19
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (664 bp):
AAACTGAGTTAGGGCCCCGAAACTCATTTTTAGCCAAAAATCGTGACGGTTTGTACACGATTTCG
GCTAAAATTTTGCAAAAAACTGACCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACTCAGAAA
AATCATATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTACTTT
TTTTCTGAATTTATTTCTAATTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAATCCGTAA
AGCCAATGTTGGTGAGATATGGTTAGATGAATATATATATTTCGAGAAGTCTTTCTGCCAAAAAT
CATGCCAAACTGAGCCAGGGCCTCGAAACGCATTTTTAACCAAAAACCGTGATGGTAGTACACGA
TTTCGGCTAAAATTTTGCAAAAAACTGACCCGAAAAGTTTTTCCCCAATTTTTTGCCACAATACT
CAGAAAAACCATATAATTCAACGACAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTT
TCCATTTTTTTGGAATTTATTTCTAACTAAATCATAACAAGATTCAGATGCTCGTAAAAACAAAT
CCGTAAAGCCAATGTCGGTGAGATTTGGTTAGATGAATATATAGATATTTCGAGAAGTCTTTCTG
CCAAAAATCATGCA
Done.