Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014243.1 Corchorus olitorius cultivar O-4 contig14276, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21895

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1010--1984
408
2.4
401
93
1
1267
35
16
14
33
1.89
1602--3301
330
5.2
329
84
6
2088
35
16
14
33
1.89
3443--3498
25
2.3
25
87
6
89
33
5
10
50
1.60
10885--11117
22
10.5
22
68
14
113
37
10
15
36
1.82
10886--11037
44
3.5
43
79
7
137
36
11
17
34
1.87
10882--11056
66
2.6
66
84
7
219
35
11
17
36
1.85
11292--11728
22
20.0
22
66
17
110
37
10
14
36
1.82
11293--11417
66
1.9
66
80
3
144
44
10
11
34
1.74
11440--11541
45
2.3
44
83
5
125
36
9
15
38
1.81
11440--11720
22
12.7
23
68
16
123
35
12
14
37
1.84
16510--16617
54
2.0
54
96
0
198
29
9
12
48
1.73

Tables:   1

The End!