Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014245.1 Corchorus olitorius cultivar O-4 contig14278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91236

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--859
320
2.7
323
92
1
1375
30
21
16
31
1.96
1097--1419
160
2.0
160
100
0
646
36
13
17
33
1.88
4027--4223
97
2.0
98
97
1
369
22
12
22
42
1.87
8352--8377
6
4.3
6
100
0
52
50
50
0
0
1.00
8831--8885
27
2.0
28
96
3
103
21
14
3
60
1.50
8831--8902
27
2.6
27
87
10
85
20
13
4
61
1.49
34289--34315
6
4.5
6
100
0
54
18
48
0
33
1.49
34775--34859
43
2.0
43
86
6
118
15
15
23
45
1.84
51612--51647
18
2.0
18
94
0
63
47
5
13
33
1.67
72300--72328
10
2.9
10
100
0
58
0
72
17
10
1.11
80542--80614
24
3.0
24
83
0
101
43
8
27
20
1.80

Tables:   1

The End!