Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014248.1 Corchorus olitorius cultivar O-4 contig14281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40307

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2732
321
8.6
320
73
11
1936
34
18
16
31
1.93
1--1161
322
3.6
322
85
2
1641
33
17
17
31
1.93
1480--3682
642
3.5
634
72
12
1848
34
18
15
31
1.92
3061--3676
322
1.9
322
86
2
869
34
17
16
32
1.92
2121--4292
938
2.3
936
87
3
3055
34
18
15
31
1.92
3384--4702
616
2.1
616
86
3
1823
34
18
14
32
1.91
4631--4773
71
2.0
71
95
0
259
32
18
4
44
1.71
5130--5256
62
2.0
62
98
0
245
32
11
12
43
1.79
6165--6214
24
2.1
24
88
0
73
14
36
14
36
1.86
7556--7616
22
2.9
22
80
4
72
36
4
8
50
1.54
16595--16629
17
2.1
17
100
0
70
37
22
17
22
1.94
16627--16651
12
2.1
12
100
0
50
48
44
0
8
1.32
17043--17076
14
2.3
15
90
5
52
58
0
5
35
1.22
19226--19261
8
4.4
8
89
6
54
30
0
0
69
0.89
19221--19263
5
8.6
5
80
10
52
32
0
0
67
0.91
19219--19266
17
2.6
18
83
16
62
31
0
0
68
0.90
24343--24398
29
1.9
29
92
0
94
30
16
19
33
1.94
38824--38945
60
2.0
59
90
3
190
31
13
9
45
1.74
38985--39095
26
4.0
26
80
12
114
36
28
20
14
1.92
39204--39343
52
2.7
52
86
2
203
20
16
10
52
1.72
39730--40104
154
2.5
144
88
8
565
16
45
12
25
1.82

Tables:   1

The End!