Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001425.1 Corchorus olitorius cultivar O-4 contig01425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29


Found at i:31 original size:20 final size:21

Alignment explanation


    Indices: 6--48  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

          1 ACCCT

                                 
          6 AATTTT-AACCACTTAAATCC
          1 AATTTTGAACCACTTAAATCC

                   *       *     
         26 AATTTTGTACCACTTGAATCC
          1 AATTTTGAACCACTTAAATCC

              
         47 AA
          1 AA

         49 GAGGGTTCCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20    6  0.30
  21   14  0.70

ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35


Consensus pattern (21 bp):   
AATTTTGAACCACTTAAATCC
Done.