Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014251.1 Corchorus olitorius cultivar O-4 contig14284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27996
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Found at i:2022 original size:228 final size:229
Alignment explanation
Indices: 1623--2677 Score: 1145
Period size: 228 Copynumber: 4.6 Consensus size: 229
1613 TTGACAACAG
* * * * * *
1623 ATGCAGATCTTCGTGAAAACTCTT-ACTGGCAAGACCATCACCCTT-GAGGTGGAAAGCTCAGAT
1 ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCA-CTTTGGAGGTGGAGAGCTCAGAT
*
1686 ACAATTGATAATGTAAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCT
65 ACAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCT
* * * * ** *
1751 GATTTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTTGCAGACTACAACATCCAAAAGGAGT
130 AATTTTTGCTGGGAAACAGCTTGAGGATGGGAGGACCCTTGCAGACTACAACATCCAAAAGGAGT
* * * *
1816 CCACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGT
195 CAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGT
* * *
1851 ATGCAGATTTTTGTGAAGACTCTT-ACTGGGAAGACTATCACTTTGGAGGTGGAGAGTTCAGATA
1 ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
* * * * * *
1915 CTATTGATAATGTGAAGGCCAAGGTTCAAGATAAGGAGGGTATTCCTCCTGACCAGCAGAGGCTC
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTA
* * * * * * *
1980 ATTTTTGCTGGGAAACAGCTTGAGGATGGAAGAACTCTTGCAGACTATAACATTCAGAAGGAATC
131 ATTTTTGCTGGGAAACAGCTTGAGGATGGGAGGACCCTTGCAGACTACAACATCCAAAAGGAGTC
* * *
2045 AACCCTTCATTTGG-TCTTACGTCTCCGTGGTGGT
196 AACCCTCCATTTGGTTC-TGCGTCTTCGTGGTGGT
* * * * * * * * * * *
2079 ATGCAAATTTTTGTGAAGACT-TTAACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTGATA
1 ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
* * * * *
2143 CTATTGACAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCACCAGATCAACAGAGGCTA
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTA
* * * *
2208 ATTTTTGCTGGCAAACAGCTGGAGGATGGGAGGACACTTGCTGACTACAACATCCAGAAA-GAGT
131 ATTTTTGCTGGGAAACAGCTTGAGGATGGGAGGACCCTTGCAGACTACAACATCCA-AAAGGAGT
*
2272 CAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGA
195 CAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGT
* * * * * *
2307 ATGCAGATATTTGTGAAAAC-CTTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTCTGACA
1 ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
* * * * * * * * * * *
2371 CGATAGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTG
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTA
* * * * * *
2436 ATCTTTGCTGGAAAACAGCTTGAAGATGGGAGGACCCTCGCAGACTATAACATTCAAAAGGAGTC
131 ATTTTTGCTGGGAAACAGCTTGAGGATGGGAGGACCCTTGCAGACTACAACATCCAAAAGGAGTC
* * * * * *
2501 AACCCTGCATTTGGTTTTGCGCCTTAGAGGTGGG
196 AACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGT
* * * * * *
2535 ATGCAGATATTTGTCAAGAC-CTTGACTGGGAAAACAATCACTCTGGAGGTTGAGAGCTCAGACA
1 ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
* * * * *
2599 CAATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTA
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTA
2664 ATTTTTGCTGGGAA
131 ATTTTTGCTGGGAA
2678 GCAGTTGGAG
Statistics
Matches: 699, Mismatches: 121, Indels: 14
0.84 0.15 0.02
Matches are distributed among these distances:
227 9 0.01
228 686 0.98
229 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (229 bp):
ATGCAGATATTTGTGAAGACTCTTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTA
ATTTTTGCTGGGAAACAGCTTGAGGATGGGAGGACCCTTGCAGACTACAACATCCAAAAGGAGTC
AACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGT
Found at i:2760 original size:456 final size:456
Alignment explanation
Indices: 1647--2761 Score: 1286
Period size: 456 Copynumber: 2.4 Consensus size: 456
1637 GAAAACTCTT
* * * * * *
1647 ACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCAGATACAATTGATAATGTAAAGGCCAAGAT
1 ACTGGAAAGACAATCA-CCTGGAGGTTGAGAGCTCAGATACAATTGATAATGTGAAGGCCAAGAT
* * *
1712 TCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTCGAGG
65 TCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTAATTTTTGCTGGCAAGCAGCTGGAGG
* * * * *
1777 ATGGTCGTACCCTTGCAGACTACAACATCCAAAAGGAGTCCACCCTCCA-CTTGGTGCTCCGTCT
130 ATGGTCGCACACTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGGTCCTCCGTCT
* * * * *
1841 TCGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACTATCACTTTGGAGGTGGAGA
195 TCGTGGTGGAATGCAGATATTTGTGAAAACTCTTACTGGGAAAACCATCACTTTGGAGGTGGAGA
* * * * * * * * * * * * *
1906 GTTCAGATACTATTGATAATGTGAAGGCCAAGGTTCAAGATAAGGAGGGTATTCCTCCTGACCAG
260 GCTCAGACACGATAGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAG
* * * * * *
1971 CAGAGGCTCATTTTTGCTGGGAAACAGCTTGAGGATGGAAGAACTCTTGCAGACTATAACATTCA
325 CAAAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTCGCAGACTATAACATTCA
* * * * * * * * *
2036 GAAGGAATCAACCCTTCATTTGGTCTTACGTCTCCGTGGTGGTATGCAAATTTTTGTGAAGACTT
390 AAAGGAATCAACCCTGCATTTGGTCTTACGCCTCAGAGGTGGGATGCAAATATTTGTCAAGACCT
2101 TA
455 TA
* * * * * * *
2103 ACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTGATACTATTGACAATGTGAAGGCCAAGAT
1 ACTGGAAAGACAATCACC-TGGAGGTTGAGAGCTCAGATACAATTGATAATGTGAAGGCCAAGAT
* * * *
2168 TCAGGATAAGGAGGGTATTCCACCAGATCAACAGAGGCTAATTTTTGCTGGCAAACAGCTGGAGG
65 TCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTAATTTTTGCTGGCAAGCAGCTGGAGG
** * * * * *
2233 ATGGGAGGACACTTGCTGACTACAACATCCAGAAAGAGTCAACCCTCCAT-TTGGTTCTGCGTCT
130 ATGGTCGCACACTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGGTCCTCCGTCT
* *
2297 TCGTGGTGGAATGCAGATATTTGTGAAAAC-CTTGACTGGTAAAACCATTACTTTGGAGGTGGAG
195 TCGTGGTGGAATGCAGATATTTGTGAAAACTCTT-ACTGGGAAAACCATCACTTTGGAGGTGGAG
* *
2361 AGCTCTGACACGATAGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCA
259 AGCTCAGACACGATAGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCA
* * * *
2426 GCAAAGGTTGATCTTTGCTGGAAAACAGCTTGAAGATGGGAGGACCCTCGCAGACTATAACATTC
324 GCAAAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTCGCAGACTATAACATTC
* * * * *
2491 AAAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTTAGAGGTGGGATGCAGATATTTGTCAAGACC
389 AAAAGGAATCAACCCTGCATTTGGTCTTACGCCTCAGAGGTGGGATGCAAATATTTGTCAAGACC
*
2556 TTG
454 TTA
* *
2559 ACTGGGAAA-ACAATCACTCTGGAGGTTGAGAGCTCAGACACAATTGATAATGTGAAGGCAAAGA
1 ACT-GGAAAGACAATCAC-CTGGAGGTTGAGAGCTCAGATACAATTGATAATGTGAAGGCCAAGA
* * * * * *
2623 TTCAGGACAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTAATTTTTGCTGGGAAGCAGTTGGAG
64 TTCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTAATTTTTGCTGGCAAGCAGCTGGAG
* * * * * * * *
2688 GACGGTCGCACTCTGGCTGATTACAATATCCAGAAGGAGTCCACCCTTCATCTT-GTCCTTCGCC
129 GATGGTCGCACACTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGGTCCTCCGTC
*
2752 TCCGTGGTGG
194 TTCGTGGTGG
2762 TTTCTAAGTT
Statistics
Matches: 543, Mismatches: 110, Indels: 12
0.82 0.17 0.02
Matches are distributed among these distances:
455 5 0.01
456 530 0.98
457 8 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (456 bp):
ACTGGAAAGACAATCACCTGGAGGTTGAGAGCTCAGATACAATTGATAATGTGAAGGCCAAGATT
CAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGCTAATTTTTGCTGGCAAGCAGCTGGAGGA
TGGTCGCACACTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGGTCCTCCGTCTT
CGTGGTGGAATGCAGATATTTGTGAAAACTCTTACTGGGAAAACCATCACTTTGGAGGTGGAGAG
CTCAGACACGATAGACAATGTCAAAGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGACCAGC
AAAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGAAGAACCCTCGCAGACTATAACATTCAA
AAGGAATCAACCCTGCATTTGGTCTTACGCCTCAGAGGTGGGATGCAAATATTTGTCAAGACCTT
A
Found at i:5567 original size:228 final size:228
Alignment explanation
Indices: 5170--6275 Score: 1107
Period size: 228 Copynumber: 4.9 Consensus size: 228
5160 TTGACAACAG
* * * * *
5170 ATGCAGATCTTTGTGAAA-ACTCTTACTGGCAAGACCATCACCCTT-GAGGTCGAAAGCTCAGAT
1 ATGCAGATATTTGT-AAAGACTCTTACTGGGAAGACCATCA-CTTTGGAGGTGGAGAGCTCAGAT
* * * *
5233 ACAATTGATAATGTAAAGGCCAAGATTCAGGATAAGGAAGGG-ATTCCTCCC-GACCAACAGAGG
64 ACAATTGATAATGTCAAGGCCAAGATTCAGGACAAGG-AGGGTATTCC-CCCAGACCAGCAAAGG
* * * * *
5296 CTCATCTTTGCTGGAAAACAGCTAGAGGATGGCCGGACTCTTGCTGACTACAACATTCAGAAGGA
127 CTGATTTTTGCTGGAAAACAGCTTGAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGA
* * *
5361 ATCTACCCTCCACCTT-GTCCTTCGTCTTAGGGGTGGA
192 GTCAACCCTCCA-CTTGGTCCTTCGTCTTAGTGGTGGA
* * * * *
5398 ATGCAGATCTTTGTAAAGACTCTTACTGGGAAGACCATCACATTGGAAGTTGAGAGCTCTGATAC
1 ATGCAGATATTTGTAAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATAC
* * * *
5463 AATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTGA
66 AATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTGA
* * * *
5528 TTTTTGCTGGTAAACAGCTTGAGGATGGCCGTACTCTTGCAGACTACAACATCCAAAAGGAGTCC
131 TTTTTGCTGGAAAACAGCTTGAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGAGTCA
* * * *
5593 ACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGT
196 ACCCTCCACTTGGTCCTTCGTCTTAGTGGTGGA
* * * * *
5626 ATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACGATCACTTTGGAAGTGGAGAGTTCAGATAC
1 ATGCAGATATTTGTAAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATAC
* * * * * * * *
5691 TATCGATAATGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCCCCTGACCAGCAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTGA
* * * ** * * * *
5756 TTTTTGCTGGGAAGCAACTTGAGGATGGAAGAACCCTTGCAGACTATAACATCCAGAAAGAGTCA
131 TTTTTGCTGGAAAACAGCTTGAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGAGTCA
* * * *
5821 ACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGA
196 ACCCTCCACTTGGTCCTTCGTCTTAGTGGTGGA
* * * * *
5854 ATGCAGATATTTGTGAAA-AC-CTTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTCTGAC
1 ATGCAGATATTTGT-AAAGACTCTT-ACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGAT
* * * * * *
5917 ACGATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTT
64 ACAATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCT
* * ** * * * * *
5982 GATCTTTGCTGGAAAACAGCTTGAAGATGGTAGGACCCTCGCCGACTATAACATTCAGAAGGAGT
129 GATTTTTGCTGGAAAACAGCTTGAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGAGT
* * * * * * *
6047 CAACCCTGCATTTGGT-TTTGCGCCTTAGAGGAGGG
194 CAACCCTCCACTTGGTCCTT-CGTCTTAGTGGTGGA
* * * * * *
6082 ATGCAGATATTTGTCAAGAC-CTTGACCGGGAAAACCATCACTCTGGAGGTTGAGAGCTCAGACA
1 ATGCAGATATTTGTAAAGACTCTT-ACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATA
* * * * * *
6146 CGATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAAAGGTTG
65 CAATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTG
* * * * * *
6211 ATTTTTGCTGGGAAGCAG-TTGGAGGATGGTCGCACTCTTGCTGACTACAATATCCAGAAGGAGT
130 ATTTTTGCTGGAAAACAGCTT-GAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGAGT
6275 C
194 C
6276 TACTCTGCAT
Statistics
Matches: 738, Mismatches: 130, Indels: 20
0.83 0.15 0.02
Matches are distributed among these distances:
227 24 0.03
228 712 0.96
229 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (228 bp):
ATGCAGATATTTGTAAAGACTCTTACTGGGAAGACCATCACTTTGGAGGTGGAGAGCTCAGATAC
AATTGATAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTGA
TTTTTGCTGGAAAACAGCTTGAGGATGGCCGGACTCTTGCAGACTACAACATCCAGAAGGAGTCA
ACCCTCCACTTGGTCCTTCGTCTTAGTGGTGGA
Found at i:6307 original size:456 final size:454
Alignment explanation
Indices: 5169--6308 Score: 1271
Period size: 456 Copynumber: 2.5 Consensus size: 454
5159 GTTGACAACA
* * * * * * * * *
5169 GATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCAGATA
1 GATGCAGATATTTGTCAAGACTCTTACCGGGAAAACCATCACTCTGGAGGTCGAGAGCTCAGATA
* * * * *
5234 CAATTGATAATGTAAAGGCCAAGATTCAGGATAAGGAAGGGATTCCTCCCGACCAACAGAGGCTC
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCTCCAGACCAGCAGAGG-TT
* * * * * * * *
5299 ATCTTTGCTGGAAAACAGCTAGAGGATGGCCGGACTCTTGCTGACTACAACATTCAGAAGGAATC
130 ATTTTTGCTGGGAAGCAG-TTGAGGATGGACGAACTCTTGCTGACTACAACATCCAGAAGGAGTC
* * * *
5364 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGAATGCAGATCTTTGTAAAGACTCTTACTGGGA
194 TACCCTCCATCTTGTCCTTCGTCTTCGTGGTGGAATGCAGATATTTGTAAAGACTCTTACTGGGA
* * * * *
5429 AGACCATCACATTGGAAGTTGAGAGCTCTGATACAATTGACAATGTCAAGGCTAAGATCCAGGAC
259 AAACCATCACATTGGAAGTGGAGAGCTCTGACACAATTGACAATGTCAAAGCCAAGATCCAGGAC
* * * * * *
5494 AAGGAGGGTATTCCCCCGGACCAGCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGCCG
324 AAGGAGGGTATCCCCCCAGACCAGCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGGCAG
* * * * * * * *
5559 TACTCTTGCAGACTACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTTCGTGGTG
389 GACCCTCGCAGACTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGCCTTAGAGGAG
5624 G
454 G
* * * * * * * * * *
5625 TATGCAGATTTTTGTGAAGACTCTTACTGGGAAGACGATCACTTTGGAAGTGGAGAGTTCAGATA
1 GATGCAGATATTTGTCAAGACTCTTACCGGGAAAACCATCACTCTGGAGGTCGAGAGCTCAGATA
* * * * * *
5690 CTATCGATAATGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCCCCTGACCAGCAGAGGCTT
66 CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCTCCAGACCAGCAGAGG-TT
* * * * * *
5755 ATTTTTGCTGGGAAGCAACTTGAGGATGGAAGAACCCTTGCAGACTATAACATCCAGAAAGAGTC
130 ATTTTTGCTGGGAAGC-AGTTGAGGATGGACGAACTCTTGCTGACTACAACATCCAGAAGGAGTC
* * *
5820 AACCCTCCAT-TTGGTTCTGCGTCTTCGTGGTGGAATGCAGATATTTGTGAAA-AC-CTTGACTG
194 TACCCTCCATCTT-GTCCTTCGTCTTCGTGGTGGAATGCAGATATTTGT-AAAGACTCTT-ACTG
* * * * *
5882 GTAAAACCATTACTTTGGAGGTGGAGAGCTCTGACACGATTGACAATGTCAAAGCCAAGATCCAG
256 GGAAAACCATCACATTGGAAGTGGAGAGCTCTGACACAATTGACAATGTCAAAGCCAAGATCCAG
*
5947 GACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAACAGCTTGAAGATGG
321 GACAAGGAGGGTATCCCCCCAGACCAGCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGG
* * * * * * * ** *
6012 TAGGACCCTCGCCGACTATAACATTCAGAAGGAGTCAACCCTGCATTTGGTTTTGCGCCTTAGAG
386 CAGGACCCTCGCAGACTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGCCTTAGAG
6077 GAGG
451 GAGG
* *
6081 GATGCAGATATTTGTCAAGAC-CTTGACCGGGAAAACCATCACTCTGGAGGTTGAGAGCTCAGAC
1 GATGCAGATATTTGTCAAGACTCTT-ACCGGGAAAACCATCACTCTGGAGGTCGAGAGCTCAGAT
* * * *
6145 ACGATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAGCAAAGGTT
65 ACAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCTCCAGACCAGCAGAGGTT
* * *
6210 GATTTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCTGACTACAATATCCAGAAGGAGT
130 -ATTTTTGCTGGGAAGCAGTT-GAGGATGGACGAACTCTTGCTGACTACAACATCCAGAAGGAGT
* * * *
6275 CTACTCTGCATCTTGTCCTTCGCCTCCGTGGTGG
193 CTACCCTCCATCTTGTCCTTCGTCTTCGTGGTGG
6309 TTTTTAAGTG
Statistics
Matches: 562, Mismatches: 114, Indels: 16
0.81 0.16 0.02
Matches are distributed among these distances:
455 13 0.02
456 543 0.97
457 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (454 bp):
GATGCAGATATTTGTCAAGACTCTTACCGGGAAAACCATCACTCTGGAGGTCGAGAGCTCAGATA
CAATTGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGGATTCCTCCAGACCAGCAGAGGTTA
TTTTTGCTGGGAAGCAGTTGAGGATGGACGAACTCTTGCTGACTACAACATCCAGAAGGAGTCTA
CCCTCCATCTTGTCCTTCGTCTTCGTGGTGGAATGCAGATATTTGTAAAGACTCTTACTGGGAAA
ACCATCACATTGGAAGTGGAGAGCTCTGACACAATTGACAATGTCAAAGCCAAGATCCAGGACAA
GGAGGGTATCCCCCCAGACCAGCAAAGGCTGATCTTTGCTGGAAAACAGCTTGAAGATGGCAGGA
CCCTCGCAGACTACAACATCCAAAAGGAGTCAACCCTCCACTTGGTGCTCCGCCTTAGAGGAGG
Found at i:17218 original size:26 final size:29
Alignment explanation
Indices: 17189--17243 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
17179 AGAAGTATTC
*
17189 TTTTT-AG-TCATTTAACTTTTTTATTAT
1 TTTTTGAGATCATTCAACTTTTTTATTAT
*
17216 TTTTTGAGATGATTCAACTTTTTTATTA
1 TTTTTGAGATCATTCAACTTTTTTATTA
17244 ATATTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 2 0.08
29 17 0.71
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (29 bp):
TTTTTGAGATCATTCAACTTTTTTATTAT
Found at i:18307 original size:325 final size:322
Alignment explanation
Indices: 17706--18533 Score: 935
Period size: 325 Copynumber: 2.5 Consensus size: 322
17696 TTAGCACTGG
* * * * ** * *
17706 CTCAATTTTGGATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATGGAACAAAATCC
1 CTCAATTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATTTATATTCATCAAACCAAATCT
* * * * *
17771 CAGCCACGTTCGACTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTTTCAATTTAATTAAA
65 CAGCCACATTAGA-TTAAGGATTTGTTTTTACGA-GCATCTGAATCTTGTTTCGATTTAATT-AG
* * * * * ** *
17836 AATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAGAAGCCCGCCAATCTTTTTGG
127 AATTAATTCGG-AAAAAAATTGAAAAATGATATTAAAAGCGTAAAAAGAACACCAATCTTTTTGG
* * * * * *
17901 CGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTATCGGATCAG
191 CGTTGAATTATATATTTTGTCTGAGTATTATGGCAAAAAATTGAAAAAAAAAATTATCGGATAAG
* *
17966 TTTTTAGCCGAAATCGTGTACTAACCATAACGGTTTTT-GGCTAAAAACGCG-TTCCCGAGCCCC
256 TTTTTAGCCGAAATCGTGTACTAACCATAACGGTTTTTGGGCTAAAAACACGTTTCCCGAGCCAC
18029 GA
321 GA
* *
18031 CTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATTTATACTCATCAAACCAAATGT
1 CTCAATTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAATATTTATATTCATCAAACCAAATCT
*
18096 CAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGCA
65 CAGCCACATTAGAT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG-A
* * * * * *
18161 ATTAATTCGG-GAAAAATTAAAAAATAATATTAAAAGTGTAAAAAGAACATCAATCTTTTTGGTG
128 ATTAATTCGGAAAAAAATTGAAAAATGATATTAAAAGCGTAAAAAGAACACCAATCTTTTTGGCG
* *
18225 TTGAATTATATATTTTGTCTGAGTATTATGGCAAAAAATTCTGAAAAAATAAAATTCT-GGTTAA
193 TTGAATTATATATTTTGTCTGAGTATTATGGCAAAAAA-T-TGAAAAAA-AAAATTATCGGATAA
* * **
18289 GTTTTTAGCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACACGTTTCGGGAGCC
255 GTTTTTAGCCG-AAATCGTGTACTAACCATAACGGTTTTTGGGCTAAAAACACGTTTCCCGAGCC
*
18354 ACGG
319 ACGA
* * * *
18358 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATGTCTATATTCATTTAATCAATCTC
1 CTCAATTTTGCATGATTTTTGGC-GAAAGACTCCTTGAAATAT-T-TA-T-A-TTCATCAAAC-C
** * *
18423 AGGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTA
59 A-AATCTCAGCCACATTAGA-TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
* *
18488 ATTAGAAATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCG
122 ATTAGAATTA-ATTCGGAAAAAAATTGAAAAATGATATTAAAAGCG
18534 AGAAAAATAT
Statistics
Matches: 422, Mismatches: 62, Indels: 28
0.82 0.12 0.05
Matches are distributed among these distances:
322 76 0.18
323 2 0.00
324 59 0.14
325 115 0.27
326 12 0.03
327 49 0.12
328 2 0.00
329 2 0.00
330 1 0.00
331 1 0.00
332 7 0.02
333 6 0.01
334 66 0.16
335 24 0.06
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (322 bp):
CTCAATTTTGCATGATTTTTGGCGAAAGACTCCTTGAAATATTTATATTCATCAAACCAAATCTC
AGCCACATTAGATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAATT
AATTCGGAAAAAAATTGAAAAATGATATTAAAAGCGTAAAAAGAACACCAATCTTTTTGGCGTTG
AATTATATATTTTGTCTGAGTATTATGGCAAAAAATTGAAAAAAAAAATTATCGGATAAGTTTTT
AGCCGAAATCGTGTACTAACCATAACGGTTTTTGGGCTAAAAACACGTTTCCCGAGCCACGA
Found at i:19381 original size:334 final size:322
Alignment explanation
Indices: 18737--19408 Score: 902
Period size: 334 Copynumber: 2.0 Consensus size: 322
18727 TTTGGAAAAA
* * * * *
18737 ATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGTGTTGAATTCTATATTTTTCTGAGTATTGTG
1 ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTCTGAGTATTGTG
* ** *
18802 GCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
66 GCAAAAAATTCAGAGAAAAAAATTCCGGATCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
*
18867 GTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTTGCATGATTTTTGGCGCAAAGACT
131 GTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTGGCATGATTTTTGGCGCAAAGACT
* *
18932 CCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCCACATTGGATATAAGGATTTGTTTTTAC
196 CCTTGAAATATCTATACTCATCAAGCCAAATCTCAGCCACATTAGATATAAGGATTTGTTTTTAC
* * * *
18997 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGGAAAAAATTGGAAAAATGAT
261 GAGCATATGAATATTGTTTCGATTTAATTAGAAATTAATTC-GGAAAAAAATAGAAAAATGAT
19060 ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTTTCTGAGTATTG
1 ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATA--TTTTTCTGAGTATTG
* *
19125 TGGCAAAAAATTCAGA-AAAAAAATTCCGGGTCAGTTTTTAGCCGAAAATCGTGTACTAACCGTC
64 TGGCAAAAAATTCAGAGAAAAAAATTCCGGATCAGTTTTTAGCCG-AAATCGTGTACTAACCATC
* ** * * *
19189 ATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGGCTCAGTTTGGCATGATTTTTGGCAG-A
128 ACGGTTTTT-GGCTAAAAACGCG-TTCCCGAGCCCCGACTCAATTTGGCATGATTTTTGGC-GCA
* * *
19253 AAGACTCCTTGAAATATCTATATTCTTCTAA-CCAATCTCAGGCTCTCAGCCACATTAGATTTAA
190 AAGACTCCTTGAAATATCTATACTCATC-AAGCCAA----A---TCTCAGCCACATTAGATATAA
*
19317 GGATTTGTTTTTATGAGCATATGAATATTGTTTCGATTTAATTAGAAA-TAGATTCGGAAAAAAA
247 GGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAGAAATTA-ATTCGGAAAAAAA
19381 TAGAAAAATGAT
311 TAGAAAAATGAT
* *
19393 ATTTAAAGCGAGAAAA
1 ATTAAAAGCGTGAAAA
19409 ATATTTCAAT
Statistics
Matches: 304, Mismatches: 30, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
323 43 0.14
324 24 0.08
325 56 0.18
326 13 0.04
327 62 0.20
328 3 0.01
331 1 0.00
333 35 0.12
334 67 0.22
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (322 bp):
ATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATATATTTTTCTGAGTATTGTG
GCAAAAAATTCAGAGAAAAAAATTCCGGATCAGTTTTTAGCCGAAATCGTGTACTAACCATCACG
GTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATTTGGCATGATTTTTGGCGCAAAGACT
CCTTGAAATATCTATACTCATCAAGCCAAATCTCAGCCACATTAGATATAAGGATTTGTTTTTAC
GAGCATATGAATATTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATAGAAAAATGAT
Found at i:19953 original size:888 final size:881
Alignment explanation
Indices: 17711--20283 Score: 4202
Period size: 869 Copynumber: 2.9 Consensus size: 881
17701 ACTGGCTCAA
* *
17711 TTTTGGATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATGGAACAAAATCCCAGCC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
*
17776 ACGTTCGACTTAAGTATTTGTTTTTACGAGGCATCTGAATCTTGTTTCAATTTAATTAAAAATTA
66 ACGTTCGATTTAAGTATTTGTTTTTACGA-GCATCTGAATCTTGTTTCAATTTAATTAAAAATTA
* * * *
17841 ATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAGAAGCCCGCCAATCTTTTTGGCGTTG
130 ATTTGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTG
* *
17906 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTATCGGATCAGTTTTT
195 AATTCTATA-TTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTT
*
17971 AGCCGAAATCGTGTACTAACCATAACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
259 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
* *
18036 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATTTATACTCATCAAACCAAATGTCAGCC
324 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCC
*
18101 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGCAATTAA
389 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
* * *
18166 TTCGGG-AAAAATTAAAAAATAATATTAAAAGTGTAAAAAGAACATCAATCTTTTTGGTGTTGAA
454 TTCGGGAAAAAATTAAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTGAA
* * * * *
18230 TTATATATTTTGTCTGAGTATTATGGCAAAAAATTCTGAAAAAATAAAATTCTGGTTAAGTTTTT
519 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTC--AGAAAA-AAAATTCCGGTTCAGTTTTT
* *
18295 AGCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACACGTTTCGGGAGCCACGGCT
581 AGCCGAAAATCGTGTACTAACC-TCATGGTTTTTGGGCTAAAAACGCGTTTCGGGAGCCCCGGCT
* *
18360 CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATGTCTATATTCATT-TAATCAATCTCA
645 CAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTC-TTCTAACCAATCTCA
18424 GGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAA
709 GGCTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAA
*
18489 TTAGAAATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTT
774 TTAGAAATAGATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTT
18554 TTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTTTGT
839 TTTGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTTTGT
18597 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
18662 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
66 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
*
18727 -TT----------TGG-AAAA--A-ATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGTGTTGA
131 TTTGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGA
18777 ATTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAG
196 ATTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAG
18842 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
261 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
18907 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCCAC
326 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCCAC
18972 ATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
391 ATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* *
19037 CGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
456 CGGGAAAAAATT-AAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTGAAT
*
19102 TATATATTTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCCGGGTCAGTTTTTAGC
520 TATATA-TTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCCGGTTCAGTTTTTAGC
*
19167 CGAAAATCGTGTACTAACCGTCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCCCCGGCTCAG
584 CGAAAATCGTGTACTAACC-TCATGGTTTTTGGGCTAAAAACGCGTTTCGGGAGCCCCGGCTCAG
*
19232 TTTGGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCTTCTAACCAATCTCAGGCT
648 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCTTCTAACCAATCTCAGGCT
*
19297 CTCAGCCACATTAGATTTAAGGATTTGTTTTTATGAGCATATGAATATTGTTTCGATTTAATTAG
713 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAG
19362 AAATAGATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTT
778 AAATAGATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTT-TTTTT
*
19427 GCGTTGAATTGTGTATTTTTTTCCGAAAATATTTCTTTTGT
842 GCGTTGAATTGTGTATTTTTTGCCGAAAATATTT-TTTTGT
*
19468 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
* *
19533 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAGTTTTATTAAAAATTAA
66 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
19598 TTTGGAAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTG
131 TTTGG-AAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTG
* * *
19663 AATTCTATATTTTTCAGAGTATTGTGGCAAAAAAATTGACAAAAAAACTTTTCGGATCAGTTTTT
195 AATTCTATATTTTTCTGAGTATTGTGGC-AAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTT
19728 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
259 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAA
*
19793 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAAAATCTATACTCATCAAGCCAAATGTCAGCC
324 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCC
* * *
19858 ACATTGGATATAAGGACTTGTTTTTACGAGCATCTAAATCTTGTTTCGATCTAATTAGAAATTAA
389 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
19923 TTCGGGAAAAAATTATAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTGA
454 TTCGGGAAAAAATTA-AAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTGA
19988 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCCGGTTCAGTTTTTAG
518 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCCGGTTCAGTTTTTAG
** *
20053 CCGAAAATCGTGTAC--A--TCATGGTTTTTAAGCTAAAAACGCGTTCTC--GAGCCCCGACTCA
583 CCGAAAATCGTGTACTAACCTCATGGTTTTTGGGCTAAAAACGCGTT-TCGGGAGCCCCGGCTCA
* * * *
20112 ATTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATACTCATCGAACCAA----A--
647 GTTTTGCATGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATATTCTTCTAACCAATCTCAGG
* * * * * *
20170 -TGTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATT
711 CTCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATT
* * * *
20234 AGAAATTA-ATTCGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAA
776 AGAAA-TAGATTC-GGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAA
20284 GACCATCAAT
Statistics
Matches: 1590, Mismatches: 69, Indels: 67
0.92 0.04 0.04
Matches are distributed among these distances:
868 2 0.00
869 513 0.32
870 93 0.06
871 187 0.12
872 29 0.02
873 4 0.00
874 69 0.04
875 35 0.02
877 1 0.00
880 1 0.00
881 61 0.04
882 25 0.02
883 5 0.00
884 5 0.00
885 37 0.02
886 92 0.06
887 136 0.09
888 295 0.19
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (881 bp):
TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGCC
ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
TTTGGAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGA
ATTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAG
CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTCAATT
TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAGCCAAATGTCAGCCAC
ATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
CGGGAAAAAATTAAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAATTCCGGTTCAGTTTTTAGCCG
AAAATCGTGTACTAACCTCATGGTTTTTGGGCTAAAAACGCGTTTCGGGAGCCCCGGCTCAGTTT
TGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCTTCTAACCAATCTCAGGCTCTC
AGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAGAAA
TAGATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTTGCGT
TGAATTGTGTATTTTTTGCCGAAAATATTTTTTTGT
Found at i:20284 original size:320 final size:323
Alignment explanation
Indices: 19468--20616 Score: 1510
Period size: 320 Copynumber: 3.5 Consensus size: 323
19458 TTTCTTTTGT
* * * * * * *
19468 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATCTCAGCC
* * * * * * *
19533 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAGTTTTATTAAAAATTAA
66 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
* * * * * * * * *
19598 TTTGGAAAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTG
131 TTCGG-GAAAAAAATAGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTG
* *
19663 AATTCTATA-TTTTTCAGAGTATTGTGGCAAAAAAATTGACAAAAAAACTTTTCGGATCAGTTTT
195 AATTCTATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTT
* *
19727 TAGCCG-AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCCGAGCCCCGACTC
259 TAGCCGAAAATCGTG-A-TAACCATCATGGTTTTTGGCTAAAAACGCGTTCTCGAGCCCCGACTC
19791 AA
322 AA
* *
19793 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAAAATCTATACTCATC-AAGCCAAATGTCAGC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAA-CCAAATCTCAGC
* * * *
19857 CACATTGGATATAAGGACTTGTTTTTACGAGCATCTAAATCTTGTTTCGATCTAATTAGAAATTA
65 CACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTA
* * *
19922 ATTCGGGAAAAAATTATAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTG
130 ATTCGGGAAAAAAATAGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTG
* * * * *
19987 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAA-ATTCCGGTTCAGTTTTT
195 AATTCTATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTTT
*
20051 AGCCGAAAATCGTG-T-A-CATCATGGTTTTTAAGCTAAAAACGCGTTCTCGAGCCCCGACTCAA
260 AGCCGAAAATCGTGATAACCATCATGGTTTTT-GGCTAAAAACGCGTTCTCGAGCCCCGACTCAA
*
20113 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCC
1 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATCTCAGCC
20178 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
66 ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
* * *
20243 TTCGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTCGGTGTTGA
131 TTCGGGAAAAAAATAGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
20308 ATTCTATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTTTA
196 ATTCTATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTTTA
* * * *
20373 GCCGAAAATCGTGTACTAACCATCATGGTTTTTGGGTTAAAAACGCGTT-TCGGGGGACCCGGCT
261 GCCGAAAATCGTG-A-TAACCATCATGGTTTTT-GGCTAAAAACGCGTTCTC--GAGCCCCGACT
*
20437 CAG
321 CAA
*
20440 TTTTGCATGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATACTCATCTAACCAATCTCAGGC
1 TTTTGCATGATTTTTGGC-GCAAAGACTCCTTGAAATATCTATACTCATCGAACCAA----A---
* * * * *
20504 TCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTA
58 TCTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTA
* *
20569 GAAA-TAGATTC-GGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAA
123 GAAATTA-ATTCGGGAAAAAAATAGAAAAATGATATTAAAAGCGTGAAAA
20617 ATATTTCAAT
Statistics
Matches: 728, Mismatches: 74, Indels: 36
0.87 0.09 0.04
Matches are distributed among these distances:
319 12 0.02
320 258 0.35
321 31 0.04
323 19 0.03
324 83 0.11
325 132 0.18
326 26 0.04
327 63 0.09
328 1 0.00
331 1 0.00
333 35 0.05
334 67 0.09
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (323 bp):
TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATCTCAGCC
ACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAA
TTCGGGAAAAAAATAGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGA
ATTCTATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTTTA
GCCGAAAATCGTGATAACCATCATGGTTTTTGGCTAAAAACGCGTTCTCGAGCCCCGACTCAA
Found at i:22410 original size:880 final size:881
Alignment explanation
Indices: 19793--22712 Score: 4805
Period size: 880 Copynumber: 3.3 Consensus size: 881
19783 CCCGACTCAA
* * * * * * ** *
19793 TTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAAAATCTATACTCATC-AAGCCAAATGTCAGC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAA-CAAAATCCCAGA
* * * * * * * * *
19857 CACATTGGATATAAGGACTTGTTTTTACGAGCATCTAAATCTTGTTTCGATCTAATTAGAAATTA
65 CACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTA
* * ** * * ** * *
19922 ATTCGGGAAAAAATTATAAAAATGATATTAAAAGCGTGAAAAGAACATCAATCTTTTTGGTGTTG
130 ATT-TGGAAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTG
* * ** * *
19987 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGA-AAAAAAATTCCGGTTCAGTTTTT
194 AATTCTATA-TTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTT
* *
20051 AGCCGAAAATCGTGT-A-CATCATGGTTTTTAAGCTAAAAACGCGTTCTCGAGCCCCGACTCAAT
258 AGCCG-AAATCGTGTAACCATCACGGTTTTT-GGCTAAAAACGCGTTCTCGAGCCCCGACTCAAT
20114 TTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCA
321 TTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCA
*
20179 CATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAGAAATTAAT
386 CATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
*
20244 TCGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTCGGTGTTGAA
451 TCGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAA
* * **
20309 TTCTATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCAGTTTTTAG
516 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATTTCGGATCAGTTTTTAG
* *
20374 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGGTTAAAAACGCGTTTCGGGGGACCCGGCTCA
581 CCGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTC-GGGGCCCCGGCTCA
*
20439 GTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATACTCATCTAACCAATCTCAGGC
645 GTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGC
20504 TCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTA
710 TCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTA
* *
20569 GAAATAGATTCGGAAAAAAATAGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTTTTTT
775 GAAATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTT
*
20634 TGCGTTGAATTGTGTATTTTTTGCCGAAAATATTTTTTTTTGT
840 TGCGTTGAATTGTGTATTTTTTGCCGAAAATA-TTTCTTTTGT
* * *
20677 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAAGAAAACCCCAGTC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
* * * *
20742 ACGTTCGATTTAAGTGTTTGTTTTTACGAGCAACTGAATCTTGTTTTAATTTAATTAGAAATTAA
66 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
* * *
20807 TTTGGAAAAAAAATGGAAAAGCGATATTAGAAGCATGAAAAGCCTGTCAATCTTTTTGGCGTTGA
131 TTTGG-AAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGA
*
20872 ATTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATAAGTTTTTAG
195 ATTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAG
20937 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCTCGAGCCCCGACTCAATT
260 CCGAAATCGTG---TAACCATCACGGTTTTTGGCTAAAAACGCGTTCTCGAGCCCCGACTCAATT
21002 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCAC
322 TTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCAC
21067 ATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
387 ATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
21132 CGGG-AAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
452 CGGGAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAAT
* *
21196 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTTAGAAAAAAAAATTTCGGGTCAGTTTTTAGC
517 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATTTCGGATCAGTTTTTAGC
*
21261 CGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGGCACCGGCTCAG
582 CGAAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTC-GGGGCCCCGGCTCAG
* *
21326 TTTGGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCTTCTAACCAATCTCAGGCT
646 TTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCT
21391 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAG
711 CTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAG
21456 AAATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTT
776 AAATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTT
*
21521 GCTTTGAATTGTGTATTTTTTGCCGAAAATATTTCTTTTGT
841 GCGTTGAATTGTGTATTTTTTGCCGAAAATATTTCTTTTGT
21562 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
* *
21627 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAGTTTTATTAAAAATTAA
66 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
* * *
21692 TTTGGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGCCAATCTTTTTGGCGGTGAA
131 TTTGGAAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGAA
* *
21757 TTCTATATTTTTCAGAGTATTGTGGC-AAAAATTGAGAGAAAAACTTTTCGAATCAGTTTTTAGC
196 TTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAGC
21821 CGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGCGTT-TACGAGCCCCGACTCAATTTTG
261 CGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGCGTTCT-CGAGCCCCGACTCAATTTTG
*
21885 CATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCAAACCAAATGTCAGCCACATT
325 CATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCACATT
21950 GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG
390 GGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG
22015 GAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTAT
455 GAAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTAT
* * *
22080 ATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAAATTCCGGTTCAGTTTTTACCCG
520 ATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAAAAAAAATTTCGGATCAGTTTTTAGCCG
* *
22145 AAAATCGTGTACTAACCATCATGGTTTTTAGGCTAAAAACGCGTTCTC-GAGCCCCGGCTCAGTT
584 AAAATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTT-TCGGGGCCCCGGCTCAGTT
* * *
22209 TTGCATGATTTTTGGCATAAAGGCTCCTTGAAATATATATATTCATCTAACCAATCTCAGGCTCT
648 TTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCTCT
*
22274 CAGCCACAATAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAGAA
713 CAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAGAA
*
22339 ATAGATTCTG-AAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTTGC
778 ATAGATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTTGC
22403 GTTGAATTGTGTATTTTTTGCCGAAAATATTTCTTTTGT
843 GTTGAATTGTGTATTTTTTGCCGAAAATATTTCTTTTGT
* * ** *
22442 TTTTGCATGATTTTTTACGTAAATACTCCTTCAAATATCTATATTCATCGAACGTAATCCCATAC
1 TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
*
22507 ACGTTCGATTTAAATATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
66 ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
*
22572 TTTGGAAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCTGTCAATCTTTTTGGCGTTGAA
131 TTTGGAAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGAA
* * *
22637 TTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAAACTTTTCGGATCTGTTTTTAAC
196 TTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAGC
22702 CGAAATCGTGT
261 CGAAATCGTGT
22713 GAAGTGTGAA
Statistics
Matches: 1913, Mismatches: 110, Indels: 29
0.93 0.05 0.01
Matches are distributed among these distances:
879 1 0.00
880 482 0.25
881 288 0.15
882 71 0.04
883 88 0.05
884 265 0.14
885 137 0.07
886 402 0.21
887 167 0.09
888 12 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (881 bp):
TTTTGCATGATTTTTGACGTAAATACTCCTTGAAATATCTATATTCATCGAACAAAATCCCAGAC
ACGTTCGATTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAAAAATTAA
TTTGGAAAAAAATGGAAAAACGATATTAAAAGCATGAAAAGCCCGTCAATCTTTTTGGCGTTGAA
TTCTATATTTTTCTGAGTATTGTGGCAAAAAATTGAGAGAAAAACTTTTCGGATCAGTTTTTAGC
CGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGCGTTCTCGAGCCCCGACTCAATTTTGC
ATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATACTCATCGAACCAAATGTCAGCCACATTG
GATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGG
AAAAAATTGGAAAAATGATATTAAAAGCGTGAAAAGACCATCAATCTTTTTGGTGTTGAATTATA
TATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAAAATTTCGGATCAGTTTTTAGCCGAA
AATCGTGTACTAACCATCATGGTTTTTGGGCTAAAAACGCGTTTCGGGGCCCCGGCTCAGTTTTG
CATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACCAATCTCAGGCTCTCAG
CCACATTAGATTTAAGGATTTGTTTTTACGAGCATATGAATATTGTTTCGATTTAATTAGAAATA
GATTCGGAAAAAAATTGAAAAATGATATTTAAAGCGAGAAAAATATTTCAATTTATTTTTGCGTT
GAATTGTGTATTTTTTGCCGAAAATATTTCTTTTGT
Found at i:22888 original size:1 final size:1
Alignment explanation
Indices: 22882--22913 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
22872 AGACACATTT
22882 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22914 CTTCAATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Done.