Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014252.1 Corchorus olitorius cultivar O-4 contig14285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119227

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4602--4640
19
2.1
19
90
9
62
43
2
5
48
1.38
33549--33610
33
1.9
32
87
6
90
32
9
14
43
1.78
37289--37323
18
1.9
18
88
0
52
31
14
31
22
1.94
37891--37937
24
2.0
24
87
8
69
36
10
38
14
1.81
37966--38002
18
2.1
18
100
0
74
21
13
32
32
1.92
48851--48882
1
32.0
1
100
0
64
100
0
0
0
0.00
49470--49500
15
2.1
15
93
0
53
25
16
9
48
1.76
67645--67692
25
1.9
25
83
8
62
35
14
10
39
1.80
73584--73842
127
2.0
128
84
8
339
36
8
1
52
1.44
73828--73866
14
2.9
13
80
3
51
41
2
2
53
1.28
76221--76326
47
2.3
47
96
0
194
33
37
8
20
1.83
76315--76354
21
1.9
21
89
0
62
27
40
20
12
1.88
76268--76400
68
2.0
68
98
0
257
32
36
12
18
1.89
86923--86997
38
2.0
38
94
0
132
50
10
17
21
1.76
87006--87034
15
1.9
15
100
0
58
13
41
6
37
1.72
90550--90611
22
2.8
22
90
0
88
32
17
14
35
1.90
105104--105383
107
2.7
104
82
8
297
41
8
8
41
1.65
108443--108498
28
2.0
28
96
0
103
42
19
10
26
1.84
116920--119203
331
6.9
328
83
6
2637
34
14
16
34
1.89
118405--118437
2
17.0
2
93
6
59
48
0
0
51
1.00
118403--118444
8
5.7
7
86
13
50
45
0
2
52
1.13

Tables:   1

The End!