Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014255.1 Corchorus olitorius cultivar O-4 contig14288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124838

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3011--3058
18
2.6
18
86
3
60
37
6
45
10
1.64
16051--16108
19
2.9
19
87
5
80
29
22
12
36
1.90
18020--18086
33
2.0
33
97
0
125
35
23
13
26
1.92
19317--19368
26
2.0
26
100
0
104
30
11
38
19
1.87
19742--19960
109
2.0
109
93
0
375
31
24
12
31
1.92
23669--23937
135
2.0
135
100
0
538
27
14
20
37
1.92
35767--35794
13
2.2
13
100
0
56
39
25
0
35
1.56
38764--38794
11
2.8
11
95
0
53
93
3
0
3
0.41
38757--38797
13
3.1
14
86
10
59
85
9
0
4
0.73
39558--39583
8
3.2
8
100
0
52
11
11
11
65
1.48
55029--55301
136
2.0
136
100
0
546
38
14
19
27
1.91
55592--55629
15
2.5
15
95
0
67
18
36
15
28
1.92
60124--60164
18
2.3
19
83
12
59
0
26
12
60
1.31
62745--62826
29
2.7
30
84
3
103
37
23
21
17
1.93
62735--62879
31
4.8
30
77
5
123
35
23
22
18
1.96
63210--63234
13
1.9
13
100
0
50
48
28
16
8
1.74
65087--65111
3
8.3
3
100
0
50
68
0
0
32
0.90
81420--81459
21
2.1
19
86
13
55
20
27
15
37
1.92
91337--91379
20
2.2
20
87
4
61
23
25
37
13
1.92
112944--113007
31
2.1
31
100
0
128
39
15
31
14
1.87
113179--113221
15
3.0
15
86
6
54
55
0
0
44
0.99
116169--116195
13
2.1
13
100
0
54
33
37
7
22
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120084--120437
31
11.4
31
97
0
573
22
18
16
42
1.88
120084--121023
62
15.8
62
82
11
520
22
17
16
43
1.87
120084--121018
93
10.2
93
88
7
1161
22
17
16
43
1.87
120439--120465
14
1.9
14
100
0
54
14
25
22
37
1.93
120409--120496
41
2.0
43
89
8
135
18
21
20
39
1.92
120447--121017
31
19.1
31
87
8
649
21
16
17
44
1.86
120378--120527
72
2.0
74
91
5
241
19
21
19
40
1.92
120588--120874
58
4.7
66
84
12
261
22
16
16
44
1.86
120619--120697
39
2.0
39
95
0
140
20
17
15
46
1.83
120675--121017
27
12.1
27
87
7
425
23
14
16
46
1.83
120658--121017
58
6.3
57
88
7
468
23
14
16
46
1.83
120658--121023
85
4.2
86
89
5
503
22
14
16
46
1.82
122842--122874
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!