Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014257.1 Corchorus olitorius cultivar O-4 contig14290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14508
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31


Found at i:11544 original size:30 final size:30

Alignment explanation


    Indices: 11505--11563  Score: 100
    Period size: 30  Copynumber: 2.0  Consensus size: 30

      11495 TTTATCTTGG

                                          
      11505 CTTTCCTCTTATACCCTCAAATTTTAATGA
          1 CTTTCCTCTTATACCCTCAAATTTTAATGA

                *         *              
      11535 CTTTTCTCTTATACTCTCAAATTTTAATG
          1 CTTTCCTCTTATACCCTCAAATTTTAATG

      11564 GCTTATTATC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.25, C:0.24, G:0.03, T:0.47


Consensus pattern (30 bp):   
CTTTCCTCTTATACCCTCAAATTTTAATGA
Done.