Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014262.1 Corchorus olitorius cultivar O-4 contig14295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109919

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4308--4335
9
3.1
9
100
0
56
53
0
46
0
1.00
4637--4750
60
1.9
60
94
0
201
35
16
14
32
1.90
4793--4957
59
2.8
58
78
2
168
30
19
16
33
1.94
6039--6067
2
15.0
2
92
7
51
48
0
0
51
1.00
6042--6068
13
2.1
13
100
0
54
44
0
0
55
0.99
7227--7307
39
2.1
39
97
0
153
55
7
20
16
1.65
7255--7372
59
2.0
59
100
0
236
55
8
20
15
1.65
28154--28223
35
2.0
35
94
0
122
25
17
14
42
1.86
31296--31359
21
3.2
20
82
8
76
37
12
20
29
1.89
31302--31359
19
2.9
19
84
5
71
37
12
20
29
1.89
31410--31447
19
2.0
19
94
0
67
39
15
28
15
1.89
32287--32343
21
2.5
24
86
11
84
15
0
61
22
1.34
32315--32358
18
2.4
18
88
0
61
15
2
59
22
1.48
32402--32442
18
2.3
18
86
0
55
9
7
60
21
1.52
32432--32474
15
2.9
15
76
13
52
13
0
65
20
1.27
32459--32527
18
3.8
18
76
0
66
14
7
55
23
1.64
32512--32565
24
2.2
24
76
0
63
16
7
57
18
1.62
32524--32648
12
9.9
12
67
16
65
9
9
56
24
1.61
32970--33006
2
18.5
2
100
0
74
51
0
0
48
1.00
33006--33034
2
14.5
2
100
0
58
51
0
48
0
1.00
38600--38662
29
2.2
29
97
0
117
36
14
15
33
1.88
38674--38716
21
2.0
21
82
8
52
34
9
4
51
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38715--39125
227
1.8
227
91
0
687
27
18
19
34
1.95
43765--43797
2
17.0
2
87
6
50
48
0
0
51
1.00
47707--47873
55
3.0
55
100
0
334
37
16
21
25
1.93
50737--50779
21
2.1
20
82
4
50
62
11
9
16
1.53
53209--53270
30
2.1
30
96
0
115
45
4
24
25
1.73
63320--63358
6
6.7
6
94
5
71
0
15
0
84
0.62
65050--65079
15
2.0
15
93
0
51
40
36
6
16
1.75
81581--81605
6
4.2
6
100
0
50
16
32
0
52
1.44
83581--83720
74
1.9
72
94
2
244
35
17
8
38
1.81
84026--84082
17
3.4
17
77
0
69
29
19
24
26
1.98
87789--87826
17
2.2
17
95
0
67
42
10
34
13
1.78
91403--91501
33
3.0
33
87
0
162
22
20
17
40
1.91
107481--107556
38
2.0
38
97
0
143
26
31
9
32
1.88

Tables:   1

The End!