Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014263.1 Corchorus olitorius cultivar O-4 contig14296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38266

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
944--1997
544
1.9
553
86
5
1501
33
16
15
34
1.91
1479--2504
334
3.1
330
86
4
1355
33
16
14
35
1.89
2666--2707
15
2.7
15
92
3
66
64
14
9
11
1.50
4109--4141
11
2.8
12
86
9
50
36
18
9
36
1.82
4959--8217
332
9.9
331
85
6
3644
34
16
14
34
1.90
9745--10135
190
2.1
189
92
0
638
38
8
20
31
1.83
9805--10137
97
3.5
97
71
11
290
39
9
19
31
1.83
10760--14379
332
11.0
332
81
6
3220
35
16
14
33
1.89
12000--14379
999
2.4
979
85
5
3133
34
17
14
33
1.90
14576--17574
331
9.1
331
82
4
3368
32
16
14
35
1.90
16993--18190
616
1.9
613
85
2
1621
31
17
16
35
1.92
17579--19107
333
4.6
331
84
2
1838
32
16
15
35
1.90
35236--35415
94
1.9
94
100
0
360
28
19
16
36
1.93
37112--37144
2
16.5
2
93
0
57
45
0
3
51
1.16

Tables:   1

The End!