Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014264.1 Corchorus olitorius cultivar O-4 contig14297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16172
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:7668 original size:29 final size:31

Alignment explanation


    Indices: 7630--7699  Score: 99
    Period size: 29  Copynumber: 2.3  Consensus size: 31

       7620 AAATTGTCAA

                                *          
       7630 TAGAGGGACCAAATTGA-CAGTTTTTGT-AG
          1 TAGAGGGACCAAATTGATCACTTTTTGTAAG

                *              *           
       7659 TAGATGGACCAAATTGATCCCTTTTTGTAAG
          1 TAGAGGGACCAAATTGATCACTTTTTGTAAG

                      
       7690 TAGAGGGACC
          1 TAGAGGGACC

       7700 TGTACGATAT


Statistics
Matches: 35,  Mismatches: 4, Indels: 2
        0.85            0.10        0.05

Matches are distributed among these distances:
  29   16  0.46
  30    8  0.23
  31   11  0.31

ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30


Consensus pattern (31 bp):   
TAGAGGGACCAAATTGATCACTTTTTGTAAG

Done.