Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014265.1 Corchorus olitorius cultivar O-4 contig14298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79141

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--50
2
23.5
2
86
0
58
42
0
6
51
1.27
667--749
31
2.7
31
98
0
157
25
26
18
30
1.98
1857--1897
12
3.2
13
83
13
57
21
0
19
58
1.39
3285--3322
17
2.2
17
90
9
60
81
2
15
0
0.80
8213--8244
16
2.0
16
100
0
64
6
6
6
81
0.99
8588--8616
15
1.9
15
100
0
58
37
34
27
0
1.57
11732--11837
33
3.2
33
82
5
142
15
56
5
22
1.60
14450--14905
226
2.0
227
96
0
842
36
14
17
31
1.90
15404--15466
30
2.1
30
96
0
117
36
14
9
39
1.78
15491--15521
15
2.1
15
100
0
62
67
6
0
25
1.14
17930--18080
75
2.0
75
97
1
286
28
14
22
34
1.93
24677--24751
35
2.1
35
97
0
141
22
18
17
41
1.90
24777--24829
19
2.8
19
80
8
54
49
0
0
50
1.00
24781--24836
25
2.1
28
87
9
82
51
0
0
48
1.00
24946--24980
18
1.9
18
94
0
61
28
8
11
51
1.67
26172--26221
25
2.0
25
100
0
100
48
12
8
32
1.69
30050--30116
33
2.0
33
97
0
125
35
16
2
44
1.63
31889--31919
15
2.1
15
93
0
53
41
9
9
38
1.71
38412--38455
1
44.0
1
95
0
79
0
0
2
97
0.16
54509--54692
84
2.2
81
88
5
287
35
23
16
23
1.95
56273--56322
3
16.7
3
87
0
73
0
38
2
60
1.09
69868--69904
19
1.9
19
94
0
65
16
29
13
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71984--72145
81
2.0
81
98
0
315
37
19
17
24
1.94
73840--73868
14
2.1
14
100
0
58
44
13
20
20
1.85
75792--75888
48
2.0
48
93
0
167
17
38
4
40
1.69
76151--76211
21
2.9
21
95
0
104
19
29
14
36
1.92
76476--76522
24
2.0
24
91
0
76
14
36
8
40
1.77
76739--76768
15
1.9
16
93
6
53
6
46
3
43
1.46
76831--76858
2
14.0
2
100
0
56
50
0
0
50
1.00
77081--77175
33
3.1
33
82
11
121
47
11
18
22
1.81
77117--77177
27
2.2
27
91
2
95
50
9
19
19
1.75
78444--78520
31
2.5
32
79
6
88
32
7
27
32
1.85

Tables:   1

The End!