Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014267.1 Corchorus olitorius cultivar O-4 contig14300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94160

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--1648
333
4.9
334
87
4
2379
33
13
18
34
1.90
4--1648
663
2.5
667
92
2
2727
33
13
18
34
1.90
3696--3930
99
2.4
99
84
2
303
41
13
28
16
1.86
4012--4061
24
2.1
24
96
0
91
54
6
28
12
1.60
6697--6875
99
1.8
99
91
0
295
46
10
26
16
1.80
6823--6929
54
2.0
54
96
0
196
50
8
28
13
1.70
8717--8865
78
1.9
78
90
2
237
43
14
26
15
1.85
8793--9009
96
2.2
100
89
6
327
42
12
26
18
1.86
9143--9222
29
2.7
30
86
3
99
30
20
11
38
1.87
11027--11093
30
2.4
28
85
12
84
46
5
31
16
1.71
14646--14719
29
2.5
30
86
4
96
40
12
18
28
1.87
15128--15161
1
34.0
1
87
0
50
94
2
0
2
0.38
15122--15161
10
4.1
10
90
6
55
90
2
2
5
0.62
15333--15599
89
3.0
89
92
0
464
31
17
21
28
1.96
43279--43351
24
3.0
24
97
0
137
34
30
12
23
1.91
50268--50307
3
13.3
3
83
0
53
65
5
0
30
1.14
50268--50307
15
2.7
15
92
0
71
65
5
0
30
1.14
68580--68605
12
2.2
12
100
0
52
50
15
15
19
1.79
74322--74374
26
2.0
26
100
0
106
41
7
22
28
1.81
82351--82534
67
2.9
63
89
7
289
35
23
15
25
1.94
89771--89851
39
2.1
39
100
0
162
23
14
30
30
1.95

Tables:   1

The End!