Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014268.1 Corchorus olitorius cultivar O-4 contig14301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98171

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8540--8575
2
18.0
2
100
0
72
50
0
0
50
1.00
9221--9259
14
2.8
14
96
0
69
35
7
25
30
1.84
12301--12409
36
3.0
36
90
0
173
10
30
19
40
1.84
24858--24893
8
4.6
8
96
3
65
0
11
0
88
0.50
24845--24884
15
2.6
15
88
4
53
2
15
2
80
0.93
24845--24892
23
2.1
23
88
0
69
2
14
2
81
0.88
32057--32106
23
2.3
23
86
6
68
44
10
16
30
1.80
36995--37043
22
2.3
20
76
10
53
14
48
0
36
1.44
41079--41142
3
21.3
3
100
0
128
32
0
0
67
0.91
46684--46760
30
2.7
28
86
13
113
18
7
18
55
1.65
52408--52459
26
2.0
26
88
0
77
38
21
11
28
1.88
63226--63271
13
3.5
13
80
11
58
0
23
15
60
1.34
63212--63272
26
2.4
25
89
5
88
0
26
13
60
1.33
63235--63317
29
3.0
27
77
11
64
2
20
12
65
1.37
79174--79299
49
2.6
49
85
7
159
30
15
15
38
1.88
79413--79462
16
3.2
16
72
11
59
62
16
6
16
1.52
79413--79465
15
3.5
15
74
7
54
58
16
5
18
1.58
82207--82442
122
1.9
121
86
4
332
44
14
10
30
1.78
82458--82513
28
2.0
28
89
0
85
33
23
5
37
1.78
82486--82645
33
5.1
33
69
15
124
31
18
8
41
1.80
82478--82654
90
2.0
90
98
0
345
32
18
8
41
1.80
83397--83426
12
2.5
12
88
0
51
0
26
36
36
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83642--83694
5
9.8
5
82
17
54
54
1
0
43
1.11
83645--83689
17
2.6
16
80
13
54
55
2
0
42
1.12
93020--93054
18
1.9
18
88
0
52
28
14
25
31
1.95
93870--97320
337
10.3
335
90
2
5293
35
17
14
32
1.90
97327--98170
336
2.5
336
90
1
1331
36
17
14
31
1.90

Tables:   1

The End!