Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014269.1 Corchorus olitorius cultivar O-4 contig14302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 147847
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:693 original size:334 final size:334
Alignment explanation
Indices: 1--2414 Score: 3380
Period size: 334 Copynumber: 7.2 Consensus size: 334
* *
1 AGGGCCCCGAAACGCATTTTTAACCAAAAACCGTGATGGTTAGTACACGATTTCGGCTGAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
** * ** ** *
66 TTTAAAAAACAGACCCG-AAAGTTTTTTCCATAATTTTTTTGCGACAATACTCTA-AAATATCAT
66 TGCAAAAAACAGACCCGAAAAG-ATTTTCCCCAA-TTTTTTGCCTCAATACTC-AGAAAAATCAT
* *
129 ATAAATCAACGCCAAAAATGTTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTC
128 ATAATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTC
* ** **
194 TGTATTTATTTCTAATTAAATCGAAACAAGATTTGGATACTCGTAAAAATAAATTTGTAAACCCA
192 TGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCA
* *
259 TTGTGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCAT
257 TTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCAT
324 GCAAAACTGAGTC
322 GCAAAACTGAGTC
* * *
337 AGGGCCCCGAAACGCA-TTTTAGCCAAAAAACGTGATGATAAGTACACGATTTCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * * * * **
401 TGCAAAAAGCTGACCCAAAAAGTTTTTCCCCAATTTTCTGCAACAATACTCAGAAAAATCATATA
66 TGCAAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCATATA
* *
466 ATTCAACGCCAAAAATATTTTAGGATTTCT-ACGCTTTCTAATATCGTTTTTCCATTATTTTCTG
131 ATTCAACGCCAAAAATATTTTAGGGTTTTTCACGC-TTCTAATATCGTTTTTCCATT-TTTTCTG
* * *
530 AATTTATTTCTAATTAAATCAAAACAAGATTCAGATACTCGTCAAAATAAATCAGTAAACCCATT
194 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATT
595 GTGGCCGAGAGATTTGATTAGATGAA-ATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGC
259 GTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGC
*
659 AAAACCGAGTC
324 AAAACTGAGTC
** *
670 AGGGCCCTAAAACGCATTTTTAGCCAAAAACCGTGATGGTTATAGTACATC-ATTTTGGCTAAAA
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGG-T-TAGTACA-CGATTTCGGCTAAAA
* * * *
734 TTTTGCAAAAAAACAGACCGGAAAACATTTTCCCCAATTTTTTGCCTCCATACTCAAAAAAATCA
63 TTTTGC-AAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCA
** * * *
799 TATAATTGGACGACCAAAATAATATTTTAGGGTTTTTCACGCCTCTAATATCGTTGTACC--TTT
127 TATAATTCAACG-CC-AAA-AATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT
* * *
862 TTCTGAATTTATTTCTAATTAAATCGAATCAACATTCAGATACTCGTAAAAATAAATCCGTAAAT
189 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAAC
* * * *
927 CCATTGTGACCGAGAGATTTGATTAGATGAATATAGATATTTAGAGATGTCTTTCTACCAAAAAA
254 CCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCC-AAAAA
992 TCATGCAAAACTGAGTC
318 TCATGCAAAACTGAGTC
* ** * *
1009 AGGGACCTAAAACGCATTTTTAGCCAAAAACCGTGATGGTTATAGTACATGATTTTGGCTAAAAT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGG-T-TAGTACACGATTTCGGCTAAAAT
* * * *
1074 TTTGCAAAAAAACAGACCGGAAAACATTTTCCCCAATTTTTTGCCTCCATACTCAAAAAAATCAT
64 TTTGC-AAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCAT
*
1139 ATAATTCGACGACCAAAATAATATTTTAGGG-TTTTCACGCTTCTAATATCGTTTTTCC-TTTTC
128 ATAATTCAACG-CC-AAA-AATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT-
* *
1202 TTCTGAATTTATTTCTAATTAAATCGAATCAAGATTCAGATACTCGTAAAAATAAATCCGTAAAT
189 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAAC
* * * *
1267 CCATTGTGACCGAAAGATTTAATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAAT
254 CCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAAT
*
1332 CATGCAAACCTGAGTC
319 CATGCAAAACTGAGTC
* *
1348 AAGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTGCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * * **
1413 TGCAAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTGCGACAATACTCAG-AAAATCATAT
66 TGCAAAAAACAGACCCGAAAAGATTTTCCCCAA-TTTTTTGCCTCAATACTCAGAAAAATCATAT
* *
1477 AATTCAATGCCAAAAAAATTTTAGGGTTTTT-ACGCTTCTAATATCGTTTTTCCATTTTTTTCTG
130 AATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCTG
* *
1541 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTCAAAATAAATCCGTAAACTCATT
194 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATT
** *
1606 GTGGCCGAGAGATTTGATTAGATGAATATAGATATTTTTAGAAGTCTTTCTGCCAAAAATTATGC
259 GTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGC
1671 AAAACTGAGTC
324 AAAACTGAGTC
*
1682 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACAGGATTTCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * * *
1747 TGCAAAAAAACGGATCCGAAAAGAGTTTCCCCAATTTTTTGCCTCCATACT-ATGAAAAATCATA
66 TGC-AAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCA-GAAAAATCATA
* * * **
1811 CAATTCGATGACCAAAATAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTGCTTTTTTT
129 TAATTCAACG-CC-AAA-AATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTT-C-CATTTT
* * *
1876 TCTCTCAATTTATTTATAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCTGTAAA
189 T-TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAA
* *
1941 TCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTAGAGAAGTCTTTCTGCCAAAAA
253 CCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAA
* *
2006 TCATGCAAACCTAAGTC
318 TCATGCAAAACTGAGTC
2023 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* *
2088 TGCAAAAAACTGACACGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCATATA
66 TGCAAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCATATA
* * *
2153 ATTCAATGCCAAAAA-ATTTTTAGGGTTTGTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGT
131 ATTCAACGCCAAAAATA-TTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGA
* *
2217 ATTTATTTATAATTAAATCGAAACAAGATTCAGATACTCTTAAAAATAAATCCGTAAACCCATTG
195 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATTG
* * * * *
2282 TGGCCGAGAGATTTAATTAGATAAATATAGATATTTCGAAAAGTCTTTCCGCCAAAAATCATGTA
260 TGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
2347 AAACTGAGTC
325 AAACTGAGTC
* * * *
2357 AGGGTCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTAGGCT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
2415 GTCATAGATT
Statistics
Matches: 1880, Mismatches: 164, Indels: 70
0.89 0.08 0.03
Matches are distributed among these distances:
333 103 0.05
334 588 0.31
335 118 0.06
336 90 0.05
337 228 0.12
338 71 0.04
339 262 0.14
340 214 0.11
341 206 0.11
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (334 bp):
AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
TGCAAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTCAGAAAAATCATATA
ATTCAACGCCAAAAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGAA
TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATTGT
GGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
AACTGAGTC
Found at i:1991 original size:675 final size:671
Alignment explanation
Indices: 1--2414 Score: 3451
Period size: 675 Copynumber: 3.6 Consensus size: 671
* *
1 AGGGCCCCGAAACGCATTTTTAACCAAAAACCGTGATGGTTAGTACACGATTTCGGCTGAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
** * ** * *
66 TTTAAAAAACAGACCCG-AAAGTTTTTTCCATAATTTTTTTGCGACAATACTCTAA-AATATCAT
66 TGCAAAAAACAGACCCGAAAAG-ATTTTCCCCAA-TTTTTTGCCACAATACTC-AAGAAAATCAT
* **
129 ATAAATCAACGCCAAAAATGTTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTC
128 ATAATTCAACGCCAAAAAAATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTC
* ** **
194 TGTATTTATTTCTAATTAAATCGAAACAAGATTTGGATACTCGTAAAAATAAATTTGTAAACCCA
192 TGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCA
259 TTGTGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCAT
257 TTGTGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCAT
* * * * *
324 GCAAAACTGAGTCAGGGCCCCGAAACGCA-TTTTAGCCAAAAAACGTGATGATAAGTACACGATT
322 GCAAAACTGAGTCAGGGCCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATT
* * * * * ** *
388 TCGGCTAAAATTTTGC-AAAAAGCTGACCCAAAAAGTTTTTCCCCAATTTTCTGCAACAATACTC
387 TCGGCTAAAATTTTGCAAAAAAACAGA-CCGAAAAGATTTTCCCCAATTTTTTGCCTCCATACTC
* * *
452 AGAAAAATCATATAATTCAACG-CC-AAA-AATATTTTAGGATTTCT-ACGCTTTCTAATATCGT
451 AGAAAAATCATATAATTCGACGACCAAAATAATATTTTAGGGTTTTTCACGC-TTCTAATATCGT
* * *
513 TTTTCCATTATTTTCTGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATACTCGTCAAAAT
515 TTTT-CATTTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAT
*
578 AAATCAGTAAACCCATTGTGGCCGAGAGATTTGATTAGATGAA-ATAGATATTTCGAGAAGTCTT
579 AAATCAGTAAATCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTT
642 TCTGCCAAAAATCATGCAAAACC-GAGTC
644 TCTGCCAAAAATCATGC-AAACCTGAGTC
** *
670 AGGGCCCTAAAACGCATTTTTAGCCAAAAACCGTGATGGTTATAGTACATC-ATTTTGGCTAAAA
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGG-T-TAGTACA-CGATTTCGGCTAAAA
* * * * *
734 TTTTGCAAAAAAACAGACCGGAAAACATTTTCCCCAATTTTTTGCCTCCATACTCAAAAAAATCA
63 TTTTGC-AAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCACAATACTCAAGAAAATCA
** * * *
799 TATAATTGGACGACCAAAATAATATTTTAGGGTTTTTCACGCCTCTAATATCGTTGTACC--TTT
127 TATAATTCAACG-CCAAAA-AA-ATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTT
* * *
862 TTCTGAATTTATTTCTAATTAAATCGAATCAACATTCAGATACTCGTAAAAATAAATCCGTAAAT
189 TTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAAC
* * * *
927 CCATTGTGACCGAGAGATTTGATTAGATGAATATAGATATTTAGAGATGTCTTTCTACCAAAAAA
254 CCATTGTGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCC-AAAAA
* *
992 TCATGCAAAACTGAGTCAGGGACCTAAAACGCATTTTTAGCCAAAAACCGTGATGGTTATAGTAC
318 TCATGCAAAACTGAGTCAGGGCCCCAAAACGCATTTTTAGCCAAAAACCGTGATGG-T-TAGTAC
* *
1057 ATGATTTTGGCTAAAATTTTGCAAAAAAACAGACCGGAAAACATTTTCCCCAATTTTTTGCCTCC
381 ATGATTTCGGCTAAAATTTTGCAAAAAAACAGACC-GAAAAGATTTTCCCCAATTTTTTGCCTCC
*
1122 ATACTCAAAAAAATCATATAATTCGACGACCAAAATAATATTTTAGGG-TTTTCACGCTTCTAAT
445 ATACTCAGAAAAATCATATAATTCGACGACCAAAATAATATTTTAGGGTTTTTCACGCTTCTAAT
* * *
1186 ATCGTTTTTCCTTTTCTTCTGAATTTATTTCTAATTAAATCGAATCAAGATTCAGATACTCGTAA
510 ATCGTTTTTCATTTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAA
* * * * *
1251 AAATAAATCCGTAAATCCATTGTGACCGAAAGATTTAATTAGATAAATATAGATATTTCGAGAAG
575 AAATAAATCAGTAAATCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAG
1316 TCTTTCTGCCAAAAATCATGCAAACCTGAGTC
640 TCTTTCTGCCAAAAATCATGCAAACCTGAGTC
* *
1348 AAGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTGCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * * *
1413 TGCAAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTGCGACAATACTC-AGAAAATCATAT
66 TGCAAAAAACAGACCCGAAAAGATTTTCCCCAA-TTTTTTGCCACAATACTCAAGAAAATCATAT
*
1477 AATTCAATGCCAAAAAAATTTTAGGGTTTTT-ACGCTTCTAATATCGTTTTTCCATTTTTTTCTG
130 AATTCAACGCCAAAAAAATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCTG
* *
1541 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTCAAAATAAATCCGTAAACTCATT
194 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATT
* * ** *
1606 GTGGCCGAGAGATTTGATTAGATGAATATAGATATTTTTAGAAGTCTTTCTGCCAAAAATTATGC
259 GTGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGC
* *
1671 AAAACTGAGTCAGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACAGGATTTC
324 AAAACTGAGTCAGGGCCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTC
* *
1736 GGCTAAAATTTTGCAAAAAAACGGATCCGAAAAGAGTTTCCCCAATTTTTTGCCTCCATACT-AT
389 GGCTAAAATTTTGCAAAAAAACAGA-CCGAAAAGATTTTCCCCAATTTTTTGCCTCCATACTCA-
* *
1800 GAAAAATCATACAATTCGATGACCAAAATAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTT
452 GAAAAATCATATAATTCGACGACCAAAATAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTT
* * *
1865 TTGCTTTTTTTTCTCTCAATTTATTTATAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAT
517 TT-C-ATTTTTT-TCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAT
* *
1930 AAATCTGTAAATCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTAGAGAAGTCTT
579 AAATCAGTAAATCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTT
*
1995 TCTGCCAAAAATCATGCAAACCTAAGTC
644 TCTGCCAAAAATCATGCAAACCTGAGTC
2023 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
1 AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
* * *
2088 TGCAAAAAACTGACACGAAAAGATTTTCCCCAATTTTTTGCCTCAATACTC-AGAAAAATCATAT
66 TGCAAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCACAATACTCAAG-AAAATCATAT
* * * *
2152 AATTCAATGCCAAAAAATTTTTAGGGTTTGTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGT
130 AATTCAACGCCAAAAAAATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGA
* *
2217 ATTTATTTATAATTAAATCGAAACAAGATTCAGATACTCTTAAAAATAAATCCGTAAACCCATTG
195 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATTG
* * * * *
2282 TGGCCGAGAGATTTAATTAGATAAATATAGATATTTCGAAAAGTCTTTCCGCCAAAAATCATGTA
260 TGACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCA
* *
2347 AAACTGAGTCAGGGTCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTAG
325 AAACTGAGTCAGGGCCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCG
2412 GCT
390 GCT
2415 GTCATAGATT
Statistics
Matches: 1562, Mismatches: 149, Indels: 62
0.88 0.08 0.03
Matches are distributed among these distances:
669 36 0.02
670 4 0.00
671 292 0.19
672 105 0.07
673 84 0.05
674 180 0.12
675 528 0.34
676 118 0.08
677 99 0.06
678 101 0.06
679 15 0.01
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (671 bp):
AGGGCCCCGAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTT
TGCAAAAAACAGACCCGAAAAGATTTTCCCCAATTTTTTGCCACAATACTCAAGAAAATCATATA
ATTCAACGCCAAAAAAATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCTGAA
TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCGTAAACCCATTGT
GACCGAGAGATTTGATTAGATAAATATAGATATTTCGAGAAGTCTTTCTGCCAAAAATCATGCAA
AACTGAGTCAGGGCCCCAAAACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACATGATTTCGG
CTAAAATTTTGCAAAAAAACAGACCGAAAAGATTTTCCCCAATTTTTTGCCTCCATACTCAGAAA
AATCATATAATTCGACGACCAAAATAATATTTTAGGGTTTTTCACGCTTCTAATATCGTTTTTCA
TTTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCAG
TAAATCCATTGTGGCCGAGAGATTTGATTAGATGAATATAGATATTTCGAGAAGTCTTTCTGCCA
AAAATCATGCAAACCTGAGTC
Found at i:4730 original size:332 final size:325
Alignment explanation
Indices: 3615--4775 Score: 1159
Period size: 332 Copynumber: 3.6 Consensus size: 325
3605 TGCTTTGTTA
* * * *
3615 CAAAAACGTGATAGTTAATACACGATTTCGGTTAAAATTTTACAAAAATTTACATAAAAGAATTT
1 CAAAAACGTGATAGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGAC-TCAAAGAATTT
* * * * **
3680 TCCTAAATTTTTTG--ACATGACTCATAAAAAATATATAATTCGACGTAAAAAAAATTGAAAGGC
65 TCCTCAA-TTTTGGACACAT-ACTCATAAAAAATATATAACTCAACGCCAAAAAAATTGAAAGGC
* * *
3743 TTCTCACGCTTCTAATATCGGTTTTCTTATTTTTTTCGAATTAATTTCTAATTAAATCGAAATAT
128 TTCTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCGAATTAA-TTCTAATTAAATCGAAACAT
* * *
3808 GATAGAGATGCTTGTAAAAACAAAT-TCTTAAATTCAATGTGGTTGAGATTTGGTTAGATGGATA
192 GATTGAGATGCTCGTAAAAACAAATCT-TTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATA
* * *
3872 TAGATATTTCAATGAGACTTGGCGCAAAAAATCATGCAAAACAGAGTCGGGACCCCGAAATGCGT
256 TAGATATTTCAATGAGACTT-GCGCCAAAAATCATGCAAAACAGAGTCGGGA-CCCGGAACGCGT
3937 TTTTAGT
319 TTTTAGT
* * * * * *
3944 CAAAAAC-TG-T-G--A-TGCATGATTTTGACTAAAATTTTGCAAAAA-TGACACAAA-ACATTT
1 CAAAAACGTGATAGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGACTCAAAGA-ATTT
** * * *
4001 CTCCTCAATTTCCCGACACCATA-TCCATAAAAAATATGTAACTCAACGCC-AAAAGATTGAAGG
65 -TCCTCAATTT-TGGACA-CATACT-CATAAAAAATATATAACTCAACGCCAAAAAAATTGAAAG
* * * * * *
4064 GCTTCTCACACTTCTAATAT--TTTTTCCGA----ATT--AATT--TTTTAATTTAATCGAAACC
126 GCTTCTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCGAATTAATTCTAATTAAATCGAAACA
* * * * * **
4119 GGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCTATGTGGCTGAGATTTTGTTAGATAAATA
191 TGATTGAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATA
* * * *
4184 TAGATATTTCAATGAGTCTTGACGTCAAAAATCATACAAAACTGAGTCGGGACCACGGAACGCGT
256 TAGATATTTCAATGAGACTTG-CGCCAAAAATCATGCAAAACAGAGTCGGGACC-CGGAACGCGT
*
4249 TTTTAGC
319 TTTTAGT
* ** *
4256 CAAAAACCGTGATAGTTAGTACATGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAGAATT
1 CAAAAA-CGTGATAGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGACTC-AAAGAATT
* * * * * *
4321 TTTCTCAATTCTTGGCCATGATACTCATAAAAAATATATAATTCAACACCAAAAATATTGAAAGG
64 TTCCTCAATT-TTGGACA-CATACTCATAAAAAATATATAACTCAACGCCAAAAAAATTGAAAGG
* * * *
4386 CTAT-TTACGCTTCTAATAGCGTTTTTCCTATTTTTTTCGAATTAATTCCTCATTGAATCGAAAC
127 CT-TCTCACGCTTCTAATATCGTTTTTCCTATTTTTTTCGAATTAATT-CTAATTAAATCGAAAC
* * * * * *
4450 ATGATTCATATGGTCGTAAAAACAAATCTTTGAATCCAATGCGGTTAAGATTTGGTTAGATGGAT
190 ATGATTGAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGAT
* * *
4515 TTAGATATTTCAATGAGACTTAGCGCCAAAAATCATGTAAAACAGAGGCAGGG-CTCCGGAACGC
255 ATAGATATTTCAATGAGACTT-GCGCCAAAAATCATGCAAAACAGAGTC-GGGAC-CCGGAACGC
4579 GTTTTTAGT
317 GTTTTTAGT
* * *
4588 CAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAATTCTACAAAAATTGACTCAATA-AATT
1 CAAAAA-CGTGATAGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGACTCAA-AGAATT
* *
4652 TCTCCTCAATTTTGGGACACAATACTAATAAAAAATATATAACTCAACGCCAAAAAAATTGAAGG
64 T-TCCTCAATTTT-GGACAC-ATACTCATAAAAAATATATAACTCAACGCCAAAAAAATTGAAAG
* * *
4717 GCTTCTCACGCTTCTAATATCGCTTTTCCTACCTTTTTCCGAATTAATTTCTAATTAAA
126 GCTTCTCACGCTTCTAATATCGTTTTTCCTA-TTTTTTTCGAATTAA-TTCTAATTAAA
4776 AATTATACTT
Statistics
Matches: 673, Mismatches: 114, Indels: 86
0.77 0.13 0.10
Matches are distributed among these distances:
311 3 0.00
312 134 0.20
313 1 0.00
314 2 0.00
315 5 0.01
316 1 0.00
317 2 0.00
318 1 0.00
319 26 0.04
320 42 0.06
321 51 0.08
322 12 0.02
323 63 0.09
324 23 0.03
325 3 0.00
326 1 0.00
327 3 0.00
328 2 0.00
329 11 0.02
331 12 0.02
332 248 0.37
333 25 0.04
334 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.32
Consensus pattern (325 bp):
CAAAAACGTGATAGTTAGTACACGATTTCGGCTAAAATTTTACAAAAATTGACTCAAAGAATTTT
CCTCAATTTTGGACACATACTCATAAAAAATATATAACTCAACGCCAAAAAAATTGAAAGGCTTC
TCACGCTTCTAATATCGTTTTTCCTATTTTTTTCGAATTAATTCTAATTAAATCGAAACATGATT
GAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGTTGAGATTTGGTTAGATGGATATAGAT
ATTTCAATGAGACTTGCGCCAAAAATCATGCAAAACAGAGTCGGGACCCGGAACGCGTTTTTAGT
Found at i:9514 original size:3 final size:3
Alignment explanation
Indices: 9506--9552 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
9496 ATTTCACCAA
9506 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9553 TATGTTATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:11871 original size:18 final size:18
Alignment explanation
Indices: 11848--11882 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11838 TGGAAGCTAT
* *
11848 GGATATGATCCTTATGGA
1 GGATATAATCCCTATGGA
11866 GGATATAATCCCTATGG
1 GGATATAATCCCTATGG
11883 CTATCCTCCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGATATAATCCCTATGGA
Found at i:17741 original size:3 final size:3
Alignment explanation
Indices: 17733--17771 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
17723 GAGAGAGAGG
17733 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
17772 ACTTGGGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22513 original size:10 final size:10
Alignment explanation
Indices: 22498--22523 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
22488 CTAAAGTAAG
22498 AATTCTCCTA
1 AATTCTCCTA
22508 AATTCTCCTA
1 AATTCTCCTA
22518 AATTCT
1 AATTCT
22524 ACACATTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (10 bp):
AATTCTCCTA
Found at i:49919 original size:13 final size:13
Alignment explanation
Indices: 49901--49925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49891 TATATATATT
49901 CATATATAATAAG
1 CATATATAATAAG
49914 CATATATAATAA
1 CATATATAATAA
49926 TAAAAATGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
CATATATAATAAG
Found at i:67122 original size:21 final size:19
Alignment explanation
Indices: 67097--67154 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
67087 GCTGCTCTAA
67097 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* *
67118 TAATCTAATCTGTACAGTG
1 TAATCTCATCTGTACAGTC
67137 TAATCTCATCTGTACAGT
1 TAATCTCATCTGTACAGT
67155 TGCTAAACAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:84096 original size:14 final size:14
Alignment explanation
Indices: 84055--84096 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
84045 TTTGACCTTT
*
84055 AATTATAAAAAAAA
1 AATTATAAAAAATA
84069 AATTATATAAAAATA
1 AATTATA-AAAAATA
*
84084 AATTTTAAAAAAT
1 AATTATAAAAAAT
84097 TATGTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AATTATAAAAAATA
Found at i:85554 original size:12 final size:12
Alignment explanation
Indices: 85537--85561 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
85527 AAATTAAGGT
85537 TTACTAATTGAA
1 TTACTAATTGAA
85549 TTACTAATTGAA
1 TTACTAATTGAA
85561 T
1 T
85562 GGTGGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TTACTAATTGAA
Found at i:85816 original size:2 final size:2
Alignment explanation
Indices: 85809--85836 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
85799 TTGTATAGTG
85809 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
85837 TACACACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:100793 original size:72 final size:72
Alignment explanation
Indices: 100707--100889 Score: 260
Period size: 72 Copynumber: 2.5 Consensus size: 72
100697 GGGAGTTATA
* * * ** *
100707 TTGAAATTGTTGACTTGTCCCACAACAATTTGAGTGGAGGAATCTCTTCTCTGGTATGCAATGAG
1 TTGAAGTTCTTGACTTGTCCCACAACAATTTGAGTGGAGAAATCTCTTCTCTCATATGCAATGAC
* *
100772 AGTTTTC
66 ACTTCTC
* *
100779 TTAGAAG-TCTTGACTTGTCCCACAACAGTTTGAGTGGAGAAATCTCTTCTCTCATATGCAATGC
1 TT-GAAGTTCTTGACTTGTCCCACAACAATTTGAGTGGAGAAATCTCTTCTCTCATATGCAATGA
100843 CACTTCTC
65 CACTTCTC
100851 TTGAAGTTCTTGACTTGTCCCACAACAATTTGAGTGGAG
1 TTGAAGTTCTTGACTTGTCCCACAACAATTTGAGTGGAG
100890 TTGTTCCACA
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
71 4 0.04
72 91 0.93
73 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (72 bp):
TTGAAGTTCTTGACTTGTCCCACAACAATTTGAGTGGAGAAATCTCTTCTCTCATATGCAATGAC
ACTTCTC
Found at i:107306 original size:46 final size:46
Alignment explanation
Indices: 107256--107392 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
107246 ACAAAAAGAC
107256 ATGGGAAATCCAAATAGAAAAGGGATTGGAATAATTCAAAATAAAA
1 ATGGGAAATCCAAATAGAAAAGGGATTGGAATAATTCAAAATAAAA
* * *
107302 ATGGGAAATCCAAATAGAGAAGGGACTGGAATAATTCAAAATAAAC
1 ATGGGAAATCCAAATAGAAAAGGGATTGGAATAATTCAAAATAAAA
* *
107348 ATGGAAAATCCAAATAGAAAAGGGATTTGAATAATTCAAATATAA
1 ATGGGAAATCCAAATAGAAAAGGGATTGGAATAATTCAAA-ATAA
107393 TCTAAGCTAA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 79 0.95
47 4 0.05
ACGTcount: A:0.53, C:0.08, G:0.19, T:0.20
Consensus pattern (46 bp):
ATGGGAAATCCAAATAGAAAAGGGATTGGAATAATTCAAAATAAAA
Found at i:107341 original size:26 final size:24
Alignment explanation
Indices: 107266--107389 Score: 68
Period size: 26 Copynumber: 5.2 Consensus size: 24
107256 ATGGGAAATC
107266 CAAATAGAAAAGGGATTGGAATAATT
1 CAAATAG-AAAGGGA-TGGAATAATT
* *
107292 CAAAATA-AAA---ATGGGA-AATC
1 C-AAATAGAAAGGGATGGAATAATT
107312 CAAATAGAGAAGGGACTGGAATAATT
1 CAAATAGA-AAGGGA-TGGAATAATT
* * *
107338 CAAA-ATAAA--CATGGAA-AATC
1 CAAATAGAAAGGGATGGAATAATT
*
107358 CAAATAGAAAAGGGATTTGAATAATT
1 CAAATAG-AAAGGGA-TGGAATAATT
107384 CAAATA
1 CAAATA
107390 TAATCTAAGC
Statistics
Matches: 73, Mismatches: 11, Indels: 28
0.65 0.10 0.25
Matches are distributed among these distances:
19 5 0.07
20 12 0.16
21 12 0.16
22 5 0.07
24 4 0.05
25 13 0.18
26 17 0.23
27 5 0.07
ACGTcount: A:0.53, C:0.08, G:0.19, T:0.20
Consensus pattern (24 bp):
CAAATAGAAAGGGATGGAATAATT
Found at i:108960 original size:41 final size:41
Alignment explanation
Indices: 108903--108983 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
108893 AGTTTTCACG
108903 AATTGAAGGCTTCATGGTGGTTGCAGTTCATCTTCAGATTA
1 AATTGAAGGCTTCATGGTGGTTGCAGTTCATCTTCAGATTA
108944 AATTGAAGGCTTCATGGTGGTTGCAGTTCATCTTCAGATT
1 AATTGAAGGCTTCATGGTGGTTGCAGTTCATCTTCAGATT
108984 GGCCTTAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (41 bp):
AATTGAAGGCTTCATGGTGGTTGCAGTTCATCTTCAGATTA
Found at i:114895 original size:27 final size:27
Alignment explanation
Indices: 114865--114944 Score: 151
Period size: 27 Copynumber: 3.0 Consensus size: 27
114855 AGCGGCGGCA
114865 GCAGGTGGTTTCTTCTCTTCCACCTTG
1 GCAGGTGGTTTCTTCTCTTCCACCTTG
*
114892 GCAGGCGGTTTCTTCTCTTCCACCTTG
1 GCAGGTGGTTTCTTCTCTTCCACCTTG
114919 GCAGGTGGTTTCTTCTCTTCCACCTT
1 GCAGGTGGTTTCTTCTCTTCCACCTT
114945 TATTTCTTCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.07, C:0.31, G:0.21, T:0.40
Consensus pattern (27 bp):
GCAGGTGGTTTCTTCTCTTCCACCTTG
Found at i:124052 original size:11 final size:11
Alignment explanation
Indices: 124036--124083 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
124026 CAGCATAACA
124036 AAAACAAAACG
1 AAAACAAAACG
*
124047 AAAACAAAACA
1 AAAACAAAACG
124058 AAAACAAAA--
1 AAAACAAAACG
*
124067 AACAAAAAAACG
1 AA-AACAAAACG
124079 AAAAC
1 AAAAC
124084 GATGCCAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 2 0.06
10 6 0.19
11 21 0.68
12 2 0.06
ACGTcount: A:0.79, C:0.17, G:0.04, T:0.00
Consensus pattern (11 bp):
AAAACAAAACG
Found at i:124082 original size:7 final size:6
Alignment explanation
Indices: 124032--124074 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
124022 TTGACAGCAT
*
124032 AACAAA AAC-AA AACGAA AAC-AA AACAAA AACAAAA AACAAA AA
1 AACAAA AACAAA AACAAA AACAAA AACAAA AAC-AAA AACAAA AA
124075 AACGAAAACG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 10 0.29
6 18 0.53
7 6 0.18
ACGTcount: A:0.81, C:0.16, G:0.02, T:0.00
Consensus pattern (6 bp):
AACAAA
Found at i:124082 original size:22 final size:21
Alignment explanation
Indices: 124032--124083 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
124022 TTGACAGCAT
*
124032 AACAAAAACAAAACGAAAACAA
1 AACAAAAACAAAAC-AAAAAAA
124054 AACAAAAACAAAA-AACAAAAA
1 AACAAAAACAAAACAA-AAAAA
*
124075 AACGAAAAC
1 AACAAAAAC
124084 GATGCCAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 2 0.07
21 12 0.44
22 13 0.48
ACGTcount: A:0.79, C:0.17, G:0.04, T:0.00
Consensus pattern (21 bp):
AACAAAAACAAAACAAAAAAA
Found at i:127621 original size:6 final size:6
Alignment explanation
Indices: 127610--127634 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
127600 AAAGTGGTGG
127610 TTGAGC TTGAGC TTGAGC TTGAGC T
1 TTGAGC TTGAGC TTGAGC TTGAGC T
127635 GAGGAATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36
Consensus pattern (6 bp):
TTGAGC
Found at i:142091 original size:77 final size:77
Alignment explanation
Indices: 141955--142109 Score: 258
Period size: 77 Copynumber: 2.0 Consensus size: 77
141945 AGCAATGGAA
*
141955 ATGGGAAGGATTGAAGCTTCAATTTATTTTTTTTATATTATTATCATCTAAGTTCTTATATAGCT
1 ATGGGAAGGATTGAAGCTTCAATTTA-TGTTTTTATATTATTATCATCTAAGTTCTTATATAGCT
142020 TTATCTAAGATGT
65 TTATCTAAGATGT
* *
142033 ATGGGAAGGATTGAAGCTTCCAATTTA-GTTTTTATATTATTATTATCTAAGTTTTTATATAGCT
1 ATGGGAAGGATTGAAGCTT-CAATTTATGTTTTTATATTATTATCATCTAAGTTCTTATATAGCT
142097 TTATCTAAGATGT
65 TTATCTAAGATGT
142110 TAGAAGGTTA
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
77 47 0.64
78 19 0.26
79 7 0.10
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (77 bp):
ATGGGAAGGATTGAAGCTTCAATTTATGTTTTTATATTATTATCATCTAAGTTCTTATATAGCTT
TATCTAAGATGT
Found at i:142253 original size:14 final size:14
Alignment explanation
Indices: 142234--142270 Score: 53
Period size: 11 Copynumber: 2.9 Consensus size: 14
142224 GAGTTACATG
142234 CTTCAAAGGCAATA
1 CTTCAAAGGCAATA
142248 CTTC-AA--CAATA
1 CTTCAAAGGCAATA
142259 CTTCAAAGGCAA
1 CTTCAAAGGCAA
142271 ATGAATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
11 9 0.45
12 2 0.10
13 2 0.10
14 7 0.35
ACGTcount: A:0.43, C:0.24, G:0.11, T:0.22
Consensus pattern (14 bp):
CTTCAAAGGCAATA
Found at i:146499 original size:330 final size:333
Alignment explanation
Indices: 143792--147847 Score: 3304
Period size: 331 Copynumber: 12.4 Consensus size: 333
143782 ACGAGTTTCG
* * * * *
143792 GGGA-CCCGGCTCAGTTATGCTTGATTTTTGGCAG-AAAGCCTCCTTGAAATATCTATATTCAT-
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGACTCCTTGAAATATCTATATTCATC
* * * * * * * *
143854 TGAACCAAATTTCAGG-CAGAATGGATTTAAGGATTTGTTTTTACGAGTATCTGAAT-TTTTTTC
65 TAAACCAAATCTC-GGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTC
* * * * **
143917 GATTTAATTAAAAATAAATTC-GAAAACAAAT-GGAAAAAC-ACTATTGGAAGCGTGAAAAACCC
129 GATTTTATTATAAATTAATTCAGAAAA-AAATAGGAAAAACGA-TATTCGAAGCGTGAAATGCCC
* * * * * * * * *
143979 TTCATTTTTTTTTGCGTTGAATTATA-CATTTTTTCTCAGTATTGTGG-CAAAAAT-TTCAGAAA
192 TTTAATATTTTTGGCATTGAATTATATAATTTTTAC-AAGTATTGTGGCCAAAAATAAT-AG-AA
* * * * * * *
144041 AATTTTTT-TGG---G---T-C-AATTTTTAGCTGAAATTGTTTACTAACTATCACAATTTTTGG
254 AATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTT-G
* *
144097 GCTAAAAACG-AGTTTCG
318 GCGAAAAACGCA--TTCC
* * * * *
144114 GGGA-CCCGGCTCAGTTTTGCTTGA-TTTTGGCAG-AAAGCCTCCTTGAAATATCTGTATTCATC
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGACTCCTTGAAATATCTATATTCATC
* * *** * * * * *
144176 -GAACCAAATCACAACCACATTGGAATTAAGGATTTGTTTTTAAGAGCATCTGAAT--TTTTTTG
65 TAAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCG
** * * * * * ** *
144238 ATTCAATTACAAATAAATTCGGAAAAAAAT-GGAAAAAC-ACTATTGGAACCGTGAAAAACCATT
130 ATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGA-TATTCGAAGCGTGAAATGCCCTT
* * * * * * *
144301 CACTTTTTTTTTGGCGTTGAATTATA-CATTTCTT-CTCAGTATTGTGG-CAAAAAT-TTCAGAA
194 TA--ATATTTTTGGCATTGAATTATATAATTT-TTAC-AAGTATTGTGGCCAAAAATAAT-AG--
* * * *
144362 AAAAATTTTT--GG---G---T-C-AAATTTTAGCTGAAATCGTGTACTAACTATCACGGTTTTT
252 AAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTT
* *
144417 GGGCTAAAAACG-AGTTTC
317 -GGCGAAAAACGCA-TTCC
* * * * * * *
144435 GGTGA-CTCGGCTAAGTTTTGCTTGATTTTTGGCAG-AAAGCCTCATTGAAATATCTATATTCAT
1 GG-GACCCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGACTCCTTGAAATATCTATATTCAT
* ** * * ** *
144498 -TGAATTAAATCTAAGG-CAGAATT-GATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTT
64 CTAAACCAAATCT-CGGTCA-CATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTT
* * * * ** * * * *
144560 TCGATTTAATTAGAAATTAATTCAG-AAAAAATATGAAAAATGATATTAAAACCGTCAAAAGTCC
127 TCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCC
** * ** * * * * *** * *
144624 TCCATTATTTTTGGTGTTAAATTATTTAAATTATAGTCGTATTTTAAG-CAAAAAT--TGAGGAA
192 TTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGT-GGCCAAAAATAAT-A-GAA
* * * *
144686 AACTTTTTCGAGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
254 AATTTTTTCG-GGTCA-GTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTT
* *
144751 GGCTAAAAACGCGTTCC
317 GGCGAAAAACGCATTCC
* * * * * *
144768 GGGGA-CCCGGCTCAGTTTTACATGATTTTTGGCAG-AAAGCCTCCATGAAATATCTGTATTCAT
1 -GGGACCCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGACTCCTTGAAATATCTATATTCAT
* * * * ** *
144831 C-GAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTC
64 CTAAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTC
* * * * * * * * **
144895 GATTTAATTACAAATAAATTCGGAACAAAAT-GGAAAAACAATATTGGAAGCATGAAAAACCCTT
129 GATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTT
* * * * ** * *
144959 CAAT-TTTTCTTGCGTTGAATTATATATTTTTTATGAGTATTGTGG-CAAAAATTTCAAAAAAAA
194 TAATATTTT-TGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAA--T--AATAGAA
* * *
145022 AATTTTTT---GTCA------C---CTTTTAGTC-GAAATCTTGTACTATAACACCATCACGGTT
254 AATTTTTTCGGGTCAGTTTTGCAAAATTTTAG-CAGAAATCGTGTAC--T-A-ACCATCACAGTT
* * * *
145074 TTCGGGGTAAAAACGCGTTTCG
314 TTTGGCG-AAAAACGC-ATTCC
* * * * ** * * *
145096 GGGA-CCCGACTCAGCTTTGCATGATTTTTGGCAG-AAACCCTCCTTGAAATACCTATGTTCATG
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGACTCCTTGAAATATCTATATTCATC
* ** * * * *
145159 T-AATCAAAT-AAGAGT--CA---GA---ATGG--TTGTTTTTACGAGCATCTGAAT-TTGTTTT
65 TAAACCAAATCTCG-GTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTC
* * * * * * **
145211 GGTTTAATTAGAAATAAATTCGGAAAAAAAT-GG-AAAAC-ATATTGGAAGCGTGAAA-AACCTT
129 GATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTT
* * * ** * *
145272 CAATTTTTTTTTGTGTTGAATTATAT-ATTTTTTCTCAGTATTGTGG-CAAAAA-AATCAGAAAA
194 TAA-TATTTTTGGCATTGAATTATATAATTTTTAC-AAGTATTGTGGCCAAAAATAAT-AGAAAA
* * * *
145334 -TTTTTAGGGTCA------C---TTTTTAGCCA-AAATTGTGTACTAACCATCACGGTTTTTGGG
256 TTTTTTCGGGTCAGTTTTGCAAAATTTTAG-CAGAAATCGTGTACTAACCATCACAGTTTTT-GG
* * *
145388 CTAAAAACGCGTTTCG
319 CGAAAAACGC-ATTCC
* * * * * *
145404 GGGA-CTCGGCTCAGTTTTGCATGATTTTTGGTAG-AAAGTCTCCTTCAAATATCTATATTCATC
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTG-CGCCAAGACTCCTTGAAATATCTATATTCATC
* * * * * ** *
145467 -AAACCAATTCTCAGTCTCATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTCG
65 TAAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCG
* * * * * * **
145531 ATTTAATTAAAAATAAATTCGGAAAAAAAT-GGAAAAACAATA-TCGGAAGCATGAAAAACCCTT
130 ATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTC-GAAGCGTGAAATGCCCTT
* * * * * * * * * * *
145594 CAATTTTTTTTTGCGTTAAATTGTATATTTTTTTCGAGTATTGTGG-AAAAAAT-TTCAG-AAAT
194 TAA-TATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAAT-AGAAAAT
** * ** * * * *
145656 TTTTT--TTTCAG--GT-C-ACCTTTTACCCGAAAATCGTGTACTAACTATCATAGTTTTTGGCG
257 TTTTTCGGGTCAGTTTTGCAAAATTTTAGCAG-AAATCGTGTACTAACCATCACAGTTTTTGGC-
145715 GAAAAA-GCATTCC
320 GAAAAACGCATTCC
* * ** *
145728 GGGAACCCAGCTCAGTTTTGCATGATTTTTTTGCGAAAAGACTCTTTGAAATATCTATATTCATC
1 GGGACCCCGGCTCAGTTTTGCATGA-TTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATC
* * * *
145793 T-AACCAAATCTC-ATCCACATAGGAATTAAGGATTTGTTTTTACGAGCATCAGAATCATATTTC
65 TAAACCAAATCTCGGT-CACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTC
* * *
145856 GATTTTATTTTAAATTAATTC-GAAAAAAATAGGAAAAACAATATTCGAAGCTTGAAATGCCCTT
129 GATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTT
*
145920 TAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCTAAAATAATAGAAAATTT
194 TAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTT
* ** *
145985 TTTCGGGTCAGTTTTGCAAAATTTTAGTAGGCATCGTGTACTAACCATCACAGTTTCTGGCGAAA
259 TTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAA
146050 AACGCATTCC
324 AACGCATTCC
* * * *
146060 GGAACCCCGGCTCAGTTTTGCATGATTTTTTGCGTCAAGACTCCATGAAATATCTATATTCTTCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
* * * * * *
146125 AAACCTAA-CGCGGTCACATTGGATTTACGGATTTATTTTTACGAGCATCGGAATCGTGTTTCGA
66 AAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGA
* * *
146189 TTTTATTATATATTAATTCAGAAAAACATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
131 TTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
146254 ATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTTT
196 ATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTTT
*
146319 TCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCATGTA-T-ACCATCACAGTTTTTGGCGAAAAA
261 TCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAA
146382 CGCATTCC
326 CGCATTCC
* * *
146390 GGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCAATATTCTTCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
* * * * * *
146455 AAACCAAA-CAT-GGTCACATTTGAATTAAGGATTTATTTTTACGAGCATCGGAATCGTGTTTCA
66 AAACCAAATC-TCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCG
* *
146518 ATTTTATTATAAAATAATTCAG-AAAAAATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTT
130 ATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTT
* *
146582 AATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATATAAAACTTT
195 AATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTT
* * * *
146647 TTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCGTCACGGTTTTTTGCTAAAA
260 TTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAA
* *
146712 ACGCGTTTC
325 ACGCATTCC
* ** * * ** * ** * *
146721 GGGACCCCAGCAAAATTTTGCAT-ATCTTCCGCACCCGGACTCCATGAAATATCTATATTCTTCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
** * * * * * *
146785 ACGCCAAA-CTCAGACACATTGGATTTCAGGATTTGTTTTTACGAGTACCAGAATCTTGTTTCGA
66 AAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGA
* *
146849 TTTTATTATAAATTAATTTAGAAAAAAATAGGAAAAGCGATATTCGAAGCGTGAAATGCCCTTTA
131 TTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
* * * * ***
146914 ATATTTTTAGCATT-AAGATATATAATTTTTACAAGTATTGTGGCCAAAAATAAAATAAAA-AAA
196 ATATTTTTGGCATTGAA-TTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTT
*
146977 TTCGGGACAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAA
260 TTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAA
147042 ACGCATTCC
325 ACGCATTCC
*
147051 GGGACCCCGGCTCAGTTTTGCATGACTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
* * *** * *
147116 -AACCAAATCTCAGCCACAACCGATTTAAGGATTTGCTTTTACGAGTATCAGAATCATGTTTCGA
66 AAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGA
*
147180 TTTTAATATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
131 TTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
* *
147245 ATATTTTTGGCATTGAATTATATAATTCTTACAAGTATTGTGGCCAAAAATAATAGAAAATGTTT
196 ATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTTT
* * *
147310 TCGGGTCAGTTTTGCAAAATTCTAGCAGAAAGCGTGTACTAACCATCACA-TTTTTGGTGAAAAA
261 TCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAA
147374 CGCATTCC
326 CGCATTCC
* * * *
147382 GGGACCCTGGCTCAG-TTTGCATAATTTTTTGCGCCAATACTCTTTGAAATATCTATATTCATCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
* * * *
147446 -AACCAAATCTCAGG-CACAACT-GATTTAAAGATTTGTTTTTACGAGCATCGGAATCATATTTC
66 AAACCAAATCTC-GGTCAC-ATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTC
* *
147508 AATTTTATTATAAATTAATTC-GAAAAAAATAGGAAAAACAATATTCGAAGCGTGAAATGCCCTT
129 GATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTT
* * *
147572 TAATATTTTTGGAATTGAATTATATAATTTTGACAAGTATTGTGGCCGAAAATAATAGAAAATTT
194 TAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTT
* *
147637 TTTCAGGTCAGTTTTGCAAAATTTTAGCAGAAGTCGTGTACTAACCATCACAGTTTTTGGCGAAA
259 TTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAA
147702 AACGCATTCC
324 AACGCATTCC
* *
147712 GGGAACCCGGCTCAGTTTTGCATGATTTTTTGCTCCAAGACTCCTTGAAATATCTATATTCATCT
1 GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
* * * * *** * * *
147777 -AGCCAAATCTCAGCCAGAACCGATTTAAGAATTTGTTTTTACGAGCAAC-GAATCGTG-TTCGA
66 AAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGA
147839 TTTTATTAT
131 TTTTATTAT
Statistics
Matches: 3175, Mismatches: 431, Indels: 249
0.82 0.11 0.06
Matches are distributed among these distances:
308 88 0.03
309 10 0.00
310 8 0.00
312 21 0.01
313 15 0.00
314 48 0.02
315 9 0.00
316 38 0.01
317 22 0.01
318 22 0.01
319 39 0.01
320 70 0.02
321 106 0.03
322 227 0.07
323 123 0.04
324 31 0.01
325 126 0.04
326 181 0.06
327 82 0.03
328 3 0.00
329 310 0.10
330 518 0.16
331 557 0.18
332 272 0.09
333 192 0.06
334 47 0.01
336 9 0.00
337 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (333 bp):
GGGACCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT
AAACCAAATCTCGGTCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAGAATCATGTTTCGA
TTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTA
ATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTTT
TCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAA
CGCATTCC
Found at i:146564 original size:661 final size:661
Alignment explanation
Indices: 143767--147847 Score: 3219
Period size: 661 Copynumber: 6.2 Consensus size: 661
143757 AACTATCATG
* * * * * * *
143767 GTTTTTGGGCTAAAAACG-AGTTTCGGGGACCCGGCTCAGTTATGCTTGATTTTTGGCAG-AAAG
1 GTTTTT-GGCGAAAAACGCA-TTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAG
* * * * * *
143830 CCTCCTTGAAATATCTATATTCAT-TGAACCAAATTTCAGGCAGA-ATGGATTTAAGGATTTGTT
63 ACTCCTTGAAATATCTATATTCATCT-AACCAAATCT-AGTCACATA-CGAATTAAGGATTTGTT
* * * * * * *
143893 TTTACGAGTATCTGAAT-TTTTTTCGATTTAATTAAAAATAAATTC-GAAAACAAAT-GGAAAAA
125 TTTACGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAA-AAATAGGAAAAA
* ** * * * * * * * *
143955 C-ACTATTGGAAGCGTGAAAAACCCTTCATTTTTTTTTGCGTTGAATTATA-CATTTTTTCTCAG
189 CGA-TATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTAC-AAG
* * * * *
144018 TATTGTGG-CAAAAAT-TTCAGAAAAATTTTTT-TGG---G---T-C-AATTTTTAGCTGAAATT
252 TATTGTGGCCAAAAATAAT-AG-AAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATC
* * * * * *
144072 GTTTACTAACTATCACAATTTTTGGGCTAAAAACG-AGTTTCGGGGA-CCCGGCTCAGTTTTGCT
315 GTGTACTAACCATCACAGTTTTT-GGCGAAAAACGCA--TTCCGGGACCCCGGCTCAGTTTTGCA
* * * * * * * * **
144135 TGA-TTTTGGCAG-AAAGCCTCCTTGAAATATCTGTATTCATC-GAACCAAATCACAACCACATT
377 T-ATTTTTTGC-GCCAAGACTCCATGAAATATCTATATTCTTCTAAACCAAA-CTC-GGCACATT
* * * * * * ** * * *
144197 GGAATTAAGGATTTGTTTTTAAGAGCATCTGAAT--TTTTTTGATTCAATTACAAATAAATTCGG
438 GGATTTACGGATTTGTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAG
* * ** * * * * *
144260 AAAAAAAT-GGAAAAAC-ACTATTGGAACCGTGAAAAACCATTCACTTTTTTTTTGGCGTTGAAT
503 AAAAAAATAGGAAAAACGA-TATTCGAAGCGTGAAATGCCCTTTA--ATATTTTTGGCATTGAAT
* * * *
144323 TATA-CATTTCTT-CTCAGTATTGTGG-CAAAAAT-TTCAGAAAAAAATTTTT--GG---G---T
565 TATATAATTT-TTAC-AAGTATTGTGGCCAAAAATAAT-AG--AAAATTTTTTCGGGTCAGTTTT
* * *
144376 -C-AAATTTTAGCTGAAATCGTGTACTAACTATCACG
625 GCAAAATTTTAGCAGAAATCGTGTACTAACCATCACA
* * * * * * *
144411 GTTTTTGGGCTAAAAACG-AGTTTCGGTG-ACTCGGCTAAGTTTTGCTTGATTTTTGGCAG-AAA
1 GTTTTT-GGCGAAAAACGCA-TTCCGG-GAACCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAA
* * ** * * * *
144473 GCCTCATTGAAATATCTATATTCAT-TGAATTAAATCTAAGGCAGA-ATTGATTTAAGGATTTGT
62 GACTCCTTGAAATATCTATATTCATCT-AACCAAATCT-AGTCACATA-CGAATTAAGGATTTGT
** * * * *
144536 TTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAG-AAAAAATATGAAAAA
124 TTTTACGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAA
* ** * * * * ** * ** * * * * ***
144600 TGATATTAAAACCGTCAAAAGTCCTCCATTATTTTTGGTGTTAAATTATTTAAATTATAGTCGTA
189 CGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTA
* * * * *
144665 TTTTAAG-CAAAAAT--TGAGGAAAACTTTTTCGAGGTCATTTTTTGCAAAATTTTAGCCGAAAT
254 TTGT-GGCCAAAAATAAT-A-GAAAATTTTTTCG-GGTCA-GTTTTGCAAAATTTTAGCAGAAAT
* * * *
144727 CGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGA-CCCGGCTCAGTTTTACAT
314 CGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCC-GGGACCCCGGCTCAGTTTTGCAT
* * * * * * *
144791 GATTTTTGGCAG-AAAGCCTCCATGAAATATCTGTATTCATC-GAACCAAATCTCAGCCACATTG
378 -ATTTTTTGC-GCCAAGACTCCATGAAATATCTATATTCTTCTAAACCAAA-CTC-GGCACATTG
* * ** * * * * *
144854 GATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTCGATTTAATTACAAATAAATTCGGA
439 GATTTACGGATTTGTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGA
* * * * ** * * *
144919 ACAAAAT-GGAAAAACAATATTGGAAGCATGAAAAACCCTTCAAT-TTTTCTTGCGTTGAATTAT
504 AAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTT-TGGCATTGAATTAT
* ** * *
144982 ATATTTTTTATGAGTATTGTGG-CAAAAATTTCAAAAAAAAAATTTTTT---GTCA------C--
568 ATAATTTTTACAAGTATTGTGGCCAAAAA--T--AATAGAAAATTTTTTCGGGTCAGTTTTGCAA
* * *
145035 -CTTTTAGTC-GAAATCTTGTACTATAACACCATCACG
629 AATTTTAG-CAGAAATCGTGTAC--T-A-ACCATCACA
* * * * * * * * * **
145071 GTTTTCGGGGTAAAAACGCGTTTCGGGGACCCGACTCAGCTTTGCATGATTTTTGGCAG-AAACC
1 GTTTTTGGCG-AAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGC-GCCAAGA
* * * * * *
145135 CTCCTTGAAATACCTATGTTCATGTAATCAAAT-AAG--A-GT-CAGAA-T--GG--TTGTTTTT
64 CTCCTTGAAATATCTATATTCATCTAACCAAATCTAGTCACATAC-GAATTAAGGATTTGTTTTT
* * * * * * * *
145190 ACGAGCATCTGAAT-TTGTTTTGGTTTAATTAGAAATAAATTCGGAAAAAAAT-GG-AAAAC-AT
128 ACGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGAT
* ** * * * ** * *
145251 ATTGGAAGCGTGAAA-AACCTTCAATTTTTTTTTGTGTTGAATTATAT-ATTTTTTCTCAGTATT
193 ATTCGAAGCGTGAAATGCCCTTTAA-TATTTTTGGCATTGAATTATATAATTTTTAC-AAGTATT
* * *
145314 GTGG-CAAAAA-AATCAGAAAA-TTTTTAGGGTCA------C---TTTTTAGCCA-AAATTGTGT
256 GTGGCCAAAAATAAT-AGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAG-CAGAAATCGTGT
* * * * *
145366 ACTAACCATCACGGTTTTTGGGCTAAAAACGCGTTTCGGGGA-CTCGGCTCAGTTTTGCATGATT
319 ACTAACCATCACAGTTTTT-GGCGAAAAACGC-ATTCCGGGACCCCGGCTCAGTTTTGCAT-ATT
* * * * * * * * * * *
145430 TTTGGTAG-AAAGTCTCCTTCAAATATCTATATTCATC-AAACCAATTCTCAGTCTCATTAGATT
381 TTTTG-CGCCAAGACTCCATGAAATATCTATATTCTTCTAAACCAA-ACTC-GGCACATTGGATT
* * ** * * * * *
145493 TAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTCGATTTAATTAAAAATAAATTCGGAAAAA
443 TACGGATTTGTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAA
* * ** * * * * * *
145558 AAT-GGAAAAACAATA-TCGGAAGCATGAAAAACCCTTCAATTTTTTTTTGCGTTAAATTGTATA
508 AATAGGAAAAACGATATTC-GAAGCGTGAAATGCCCTTTAA-TATTTTTGGCATTGAATTATATA
* * * * * ** * **
145621 TTTTTTTCGAGTATTGTGG-AAAAAAT-TTCAG-AAATTTTTT--TTTCAG--GT-C-ACCTTTT
571 ATTTTTACAAGTATTGTGGCCAAAAATAAT-AGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTT
* * * *
145677 ACCCGAAAATCGTGTACTAACTATCATA
635 AGCAG-AAATCGTGTACTAACCATCACA
* **
145705 GTTTTTGGCGGAAAAA-GCATTCCGGGAACCCAGCTCAGTTTTGCATGATTTTTTTGCGAAAAGA
1 GTTTTTGGC-GAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGA-TTTTTTGCGCCAAGA
* *
145769 CTCTTTGAAATATCTATATTCATCTAACCAAATCTCA-TCCACATAGGAATTAAGGATTTGTTTT
64 CTCCTTGAAATATCTATATTCATCTAACCAAATCT-AGT-CACATACGAATTAAGGATTTGTTTT
* * *
145833 TACGAGCATCAGAATCATATTTCGATTTTATTTTAAATTAATTC-GAAAAAAATAGGAAAAACAA
127 TACGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGA
*
145897 TATTCGAAGCTTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTG
192 TATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTG
* * **
145962 TGGCCTAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGTAGGCATCGTGTACT
257 TGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACT
* *
146027 AACCATCACAGTTTCTGGCGAAAAACGCATTCCGGAACCCCGGCTCAGTTTTGCATGATTTTTTG
322 AACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCGGCTCAGTTTTGCAT-ATTTTTTG
* * *
146092 CGTCAAGACTCCATGAAATATCTATATTCTTCTAAACCTAACGCGGTCACATTGGATTTACGGAT
386 CGCCAAGACTCCATGAAATATCTATATTCTTCTAAACCAAACTCGG-CACATTGGATTTACGGAT
* * * * *
146157 TTATTTTTACGAGCATCGGAATCGTGTTTCGATTTTATTATATATTAATTCAGAAAAACATAGCA
450 TTGTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGA
146222 AAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACA
515 AAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACA
146287 AGTATTGTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATC
580 AGTATTGTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATC
*
146352 ATGTA-T-ACCATCACA
645 GTGTACTAACCATCACA
**
146367 GTTTTTGGCGAAAAACGCATTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACT
1 GTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACT
* * * ** *
146432 CCTTGAAATATCAATATTCTTCTAAACCAAA-CATGGTCACATTTGAATTAAGGATTTATTTTTA
66 CCTTGAAATATCTATATTCATCT-AACCAAATC-TAGTCACATACGAATTAAGGATTTGTTTTTA
* * * * *
146496 CGAGCATCGGAATCGTGTTTCAATTTTATTATAAAATAATTCAG-AAAAAATAGCAAAAACGATA
129 CGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATA
146560 TTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTG
194 TTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTG
* *
146625 GCCAAAAATAATATAAAACTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAA
259 GCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAA
* * * * * * * ** * * ** *
146690 CCGTCACGGTTTTTTGCTAAAAACGCGTTTCGGGACCCCAGCAAAATTTTGCATATCTTCCGCAC
324 CCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCGGCTCAGTTTTGCATATTTTTTGCGC
** ** *
146755 CCGGACTCCATGAAATATCTATATTCTTCTACGCCAAACTCAGACACATTGGATTT-CAGGATTT
389 CAAGACTCCATGAAATATCTATATTCTTCTAAACCAAACTC-GGCACATTGGATTTAC-GGATTT
* * * * *
146819 GTTTTTACGAGTACCAGAATCTTGTTTCGATTTTATTATAAATTAATTTAGAAAAAAATAGGAAA
452 GTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAA
* * *
146884 AGCGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTAGCATT-AAGATATATAATTTTTACAA
517 AACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAA-TTATATAATTTTTACAA
* * *** *
146948 GTATTGTGGCCAAAAATAAAATAAAA-AAATTCGGGACAGTTTTGCAAAATTTTAGCAGAAATCG
581 GTATTGTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCG
147012 TGTACTAACCATCACA
646 TGTACTAACCATCACA
* *
147028 GTTTTTGGCGAAAAACGCATTCCGGGACCCCGGCTCAGTTTTGCATGACTTTTTGCGCCAAGACT
1 GTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACT
* * *
147093 CCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACA-ACCGATTTAAGGATTTGCTTTTA
66 CCTTGAAATATCTATATTCATCTAACCAAATCT-AGTCACATA-CGAATTAAGGATTTGTTTTTA
* *
147157 CGAGTATCAGAATCATGTTTCGATTTTAATATAAATTAATTCAGAAAAAAATAGGAAAAACGATA
129 CGAGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATA
*
147222 TTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTCTTACAAGTATTGTG
194 TTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTG
* * *
147287 GCCAAAAATAATAGAAAATGTTTTCGGGTCAGTTTTGCAAAATTCTAGCAGAAAGCGTGTACTAA
259 GCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAA
* *
147352 CCATCACA-TTTTTGGTGAAAAACGCATTCCGGGACCCTGGCTCAG-TTTGCATAATTTTTTGCG
324 CCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCGGCTCAGTTTTGCAT-ATTTTTTGCG
* ** * * **
147415 CCAATACTCTTTGAAATATCTATATTCATCT-AACCAAATCTCAGGCACAACT-GATTTAAAGAT
388 CCAAGACTCCATGAAATATCTATATTCTTCTAAACCAAA-CTC-GGCAC-ATTGGATTTACGGAT
* *
147478 TTGTTTTTACGAGCATCGGAATCATATTTCAATTTTATTATAAATTAATTC-GAAAAAAATAGGA
450 TTGTTTTTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGA
* * *
147542 AAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGAATTGAATTATATAATTTTGACA
515 AAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACA
* * *
147607 AGTATTGTGGCCGAAAATAATAGAAAATTTTTTCAGGTCAGTTTTGCAAAATTTTAGCAGAAGTC
580 AGTATTGTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATC
147672 GTGTACTAACCATCACA
645 GTGTACTAACCATCACA
*
147689 GTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGCTCCAAGACT
1 GTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACT
* * * * *
147754 CCTTGAAATATCTATATTCATCTAGCCAAATCTCAGCCAGA-ACCGATTTAAGAATTTGTTTTTA
66 CCTTGAAATATCTATATTCATCTAACCAAATCT-AGTCACATA-CGAATTAAGGATTTGTTTTTA
* *
147818 CGAGCAAC-GAATCGTG-TTCGATTTTATTAT
129 CGAGCATCAGAATCATGTTTCGATTTTATTAT
Statistics
Matches: 2883, Mismatches: 416, Indels: 261
0.81 0.12 0.07
Matches are distributed among these distances:
631 9 0.00
632 4 0.00
633 27 0.01
634 91 0.03
635 190 0.07
636 44 0.02
637 12 0.00
638 11 0.00
639 4 0.00
640 1 0.00
642 2 0.00
644 169 0.06
645 115 0.04
646 41 0.01
647 84 0.03
648 28 0.01
649 41 0.01
650 28 0.01
652 2 0.00
654 5 0.00
655 41 0.01
656 180 0.06
657 167 0.06
658 148 0.05
659 70 0.02
660 402 0.14
661 741 0.26
662 206 0.07
663 2 0.00
664 10 0.00
665 8 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (661 bp):
GTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACT
CCTTGAAATATCTATATTCATCTAACCAAATCTAGTCACATACGAATTAAGGATTTGTTTTTACG
AGCATCAGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACGATATT
CGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATTGTGGC
CAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTACTAACC
ATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCGGCTCAGTTTTGCATATTTTTTGCGCCA
AGACTCCATGAAATATCTATATTCTTCTAAACCAAACTCGGCACATTGGATTTACGGATTTGTTT
TTACGAGCATCGGAATCATGTTTCGATTTTATTATAAATTAATTCAGAAAAAAATAGGAAAAACG
ATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTGAATTATATAATTTTTACAAGTATT
GTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAATTTTAGCAGAAATCGTGTAC
TAACCATCACA
Found at i:147705 original size:991 final size:992
Alignment explanation
Indices: 145683--147847 Score: 3057
Period size: 991 Copynumber: 2.2 Consensus size: 992
145673 TTTTACCCGA
* * ** *
145683 AAATCGTGTACTAACTATCATAGTTTTTGGCGGAAAAA-GCATTCCGGGAACCCAGCTCAGTTTT
1 AAATCGTGTACTAACCATCACAGTTTTTGGC-GAAAAACGCATTCCGGGAACCCAGCAAAATTTT
* ** * ** * *
145747 GCATGATTTTTTTGCGA-AAAGACTCTTTGAAATATCTATATTCATCTAACCAAATCTCATCCAC
65 GCATGA-TCTTCCGC-ACCAAGACTCCATGAAATATCTATATTCATCTAGCCAAATCTCAGCCAC
* * * *
145811 ATAGGAATTAAGGATTTGTTTTTACGAGCATCAGAATCATATTTCGATTTTATTTTAAATTAATT
128 ATAGGATTTAAGGATTTGTTTTTACGAGCAACAGAATCATGTTTCGATTTTATTATAAATTAATT
* * * *
145876 CGAAAAAAATAGGAAAAACAATATTCGAAGCTTGAAATGCCCTTTAATATTTTTGGCATTGAATT
193 AGAAAAAAATAGGAAAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTTAGCATTGAAAT
* * *** *
145941 ATATAATTTTTACAAGTATTGTGGCCTAAAATAATAGAAAATTTTTTCGGGTCAGTTTTGCAAAA
258 ATATAATTTTTACAAGTATTGTGGCCAAAAATAAAAGAAAATAAATTCGGGACAGTTTTGCAAAA
* **
146006 TTTTAGTAGGCATCGTGTACTAACCATCACAGTTTCTGGCGAAAAACGCATTCCGGAACCCCGGC
323 TTTTAGCAGAAATCGTGTACTAACCATCACAGTTTCTGGCGAAAAACGCATTCCGGAACCCCGGC
* * * *
146071 TCAGTTTTGCATGATTTTTTGCGTCAAGACTCCATGAAATATCTATATTCTTCTAAACCTAACGC
388 TCAGTTTTGCATGACTTTTTGCGCCAAGACTCCATGAAATATCTATATTCATCTAAACCAAACGC
* * *** * * * * * *
146136 GGTCACATTGGATTTACGGATTTATTTTTACGAGCATCGGAATCGTGTTTCGATTTTATTATATA
453 AGCCACAACCGATTTAAGGATTTACTTTTACGAGCATCAGAATCATGTTTCGATTTTAATATAAA
*
146201 TTAATTCAGAAAAACATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCA
518 TTAATTCAGAAAAAAATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCA
* *
146266 TTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATAGAAAATTTTTTCGGGTCAGTTT
583 TTGAATTATATAATTCTTACAAGTATTGTGGCCAAAAATAATAGAAAATGTTTTCGGGTCAGTTT
* * *
146331 TGCAAAATTTTAGCAGAAATCATGTATACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGGCC
648 TGCAAAATTCTAGCAGAAAGCATGTATACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACC
* *
146396 CCGGCTCAGTTTTGCATGATTTTTTGCGCCAAGACTCCTTGAAATATCAATATTCTTCTAAACCA
713 CCGGCTCAGTTTTGCATAATTTTTTGCGCCAAGACTCCTTGAAATATCAATATTCATCTAAACCA
** * * *
146461 AACATGGTCACATTTGAATTAAGGATTTATTTTTACGAGCATCGGAATCGTGTTTCAATTTTATT
778 AACATGGTCACAACTGAATTAAAGATTTATTTTTACGAGCATCGGAATCATATTTCAATTTTATT
*
146526 ATAAAATAATTCAGAAAAAATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTT
843 ATAAAATAATTCAGAAAAAATAGCAAAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTT
* * * *
146591 GGCATTGAATTATATAATTTTTACAAGTATTGTGGCCAAAAATAATATAAAACTTTTTCGGGTCA
908 GGAATTGAATTATATAATTTTGACAAGTATTGTGGCCAAAAATAATAGAAAACTTTTTCAGGTCA
146656 GTTTTGCAAAATTTTAGCAG
973 GTTTTGCAAAATTTTAGCAG
* * * * * * *
146676 AAATCGTGTACTAACCGTCACGGTTTTTTGCTAAAAACGCGTTTCGGGACCCCAGCAAAATTTTG
1 AAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGAACCCAGCAAAATTTTG
** * *
146741 CAT-ATCTTCCGCACCCGGACTCCATGAAATATCTATATTCTTCTACGCCAAA-CTCAGACACAT
66 CATGATCTTCCGCACCAAGACTCCATGAAATATCTATATTCATCTA-GCCAAATCTCAGCCACAT
* * * * *
146804 TGGATTTCAGGATTTGTTTTTACGAGTACCAGAATCTTGTTTCGATTTTATTATAAATTAATTTA
130 AGGATTTAAGGATTTGTTTTTACGAGCAACAGAATCATGTTTCGATTTTATTATAAATTAA-TTA
* *
146869 GAAAAAAATAGGAAAAGCGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTAGCATT-AAGAT
194 GAAAAAAATAGGAAAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTTAGCATTGAA-AT
*
146933 ATATAATTTTTACAAGTATTGTGGCCAAAAATAAAATAAAA-AAATTCGGGACAGTTTTGCAAAA
258 ATATAATTTTTACAAGTATTGTGGCCAAAAATAAAAGAAAATAAATTCGGGACAGTTTTGCAAAA
* *
146997 TTTTAGCAGAAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCGGC
323 TTTTAGCAGAAATCGTGTACTAACCATCACAGTTTCTGGCGAAAAACGCATTCCGGAACCCCGGC
* *
147062 TCAGTTTTGCATGACTTTTTGCGCCAAGACTCCTTGAAATATCTATATTCATCT-AACCAAATCT
388 TCAGTTTTGCATGACTTTTTGCGCCAAGACTCCATGAAATATCTATATTCATCTAAACCAAA-CG
* *
147126 CAGCCACAACCGATTTAAGGATTTGCTTTTACGAGTATCAGAATCATGTTTCGATTTTAATATAA
452 CAGCCACAACCGATTTAAGGATTTACTTTTACGAGCATCAGAATCATGTTTCGATTTTAATATAA
*
147191 ATTAATTCAGAAAAAAATAGGAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGC
517 ATTAATTCAGAAAAAAATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGC
147256 ATTGAATTATATAATTCTTACAAGTATTGTGGCCAAAAATAATAGAAAATGTTTTCGGGTCAGTT
582 ATTGAATTATATAATTCTTACAAGTATTGTGGCCAAAAATAATAGAAAATGTTTTCGGGTCAGTT
* *
147321 TTGCAAAATTCTAGCAGAAAGCGTGTACTAACCATCACA-TTTTTGGTGAAAAACGCATTCCGGG
647 TTGCAAAATTCTAGCAGAAAGCATGTA-T-ACCATCACAGTTTTTGGCGAAAAACGCATTCCGGG
* * * *
147385 ACCCTGGCTCAG-TTTGCATAATTTTTTGCGCCAATACTCTTTGAAATATCTATATTCATCT-AA
710 ACCCCGGCTCAGTTTTGCATAATTTTTTGCGCCAAGACTCCTTGAAATATCAATATTCATCTAAA
* *
147448 CCAAATC-TCAGG-CACAACTGATTTAAAGATTTGTTTTTACGAGCATCGGAATCATATTTCAAT
775 CCAAA-CAT--GGTCACAACTGAATTAAAGATTTATTTTTACGAGCATCGGAATCATATTTCAAT
* *
147511 TTTATTATAAATTAATTC-GAAAAAAATAGGAAAAACAATATTCGAAGCGTGAAATGCCCTTTAA
837 TTTATTATAAAATAATTCAG-AAAAAATAGCAAAAACAATATTCGAAGCGTGAAATGCCCTTTAA
* *
147575 TATTTTTGGAATTGAATTATATAATTTTGACAAGTATTGTGGCCGAAAATAATAGAAAATTTTTT
901 TATTTTTGGAATTGAATTATATAATTTTGACAAGTATTGTGGCCAAAAATAATAGAAAACTTTTT
147640 CAGGTCAGTTTTGCAAAATTTTAGCAG
966 CAGGTCAGTTTTGCAAAATTTTAGCAG
* * ** *
147667 AAGTCGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGAACCCGGCTCAGTTTTG
1 AAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGAACCCAGCAAAATTTTG
* ** * * *
147732 CATGATTTTTTGCTCCAAGACTCCTTGAAATATCTATATTCATCTAGCCAAATCTCAGCCAGA-A
66 CATGATCTTCCGCACCAAGACTCCATGAAATATCTATATTCATCTAGCCAAATCTCAGCCACATA
* * *
147796 CCGATTTAAGAATTTGTTTTTACGAGCAAC-GAATCGTG-TTCGATTTTATTAT
131 -GGATTTAAGGATTTGTTTTTACGAGCAACAGAATCATGTTTCGATTTTATTAT
Statistics
Matches: 1028, Mismatches: 129, Indels: 33
0.86 0.11 0.03
Matches are distributed among these distances:
990 30 0.03
991 729 0.71
992 210 0.20
993 59 0.06
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (992 bp):
AAATCGTGTACTAACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGAACCCAGCAAAATTTTG
CATGATCTTCCGCACCAAGACTCCATGAAATATCTATATTCATCTAGCCAAATCTCAGCCACATA
GGATTTAAGGATTTGTTTTTACGAGCAACAGAATCATGTTTCGATTTTATTATAAATTAATTAGA
AAAAAATAGGAAAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTTAGCATTGAAATATA
TAATTTTTACAAGTATTGTGGCCAAAAATAAAAGAAAATAAATTCGGGACAGTTTTGCAAAATTT
TAGCAGAAATCGTGTACTAACCATCACAGTTTCTGGCGAAAAACGCATTCCGGAACCCCGGCTCA
GTTTTGCATGACTTTTTGCGCCAAGACTCCATGAAATATCTATATTCATCTAAACCAAACGCAGC
CACAACCGATTTAAGGATTTACTTTTACGAGCATCAGAATCATGTTTCGATTTTAATATAAATTA
ATTCAGAAAAAAATAGCAAAAACGATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGCATTG
AATTATATAATTCTTACAAGTATTGTGGCCAAAAATAATAGAAAATGTTTTCGGGTCAGTTTTGC
AAAATTCTAGCAGAAAGCATGTATACCATCACAGTTTTTGGCGAAAAACGCATTCCGGGACCCCG
GCTCAGTTTTGCATAATTTTTTGCGCCAAGACTCCTTGAAATATCAATATTCATCTAAACCAAAC
ATGGTCACAACTGAATTAAAGATTTATTTTTACGAGCATCGGAATCATATTTCAATTTTATTATA
AAATAATTCAGAAAAAATAGCAAAAACAATATTCGAAGCGTGAAATGCCCTTTAATATTTTTGGA
ATTGAATTATATAATTTTGACAAGTATTGTGGCCAAAAATAATAGAAAACTTTTTCAGGTCAGTT
TTGCAAAATTTTAGCAG
Done.