Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014272.1 Corchorus olitorius cultivar O-4 contig14305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80601

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5597--5814
84
2.6
84
93
0
357
33
22
12
31
1.92
12750--12802
24
2.2
24
80
6
63
47
7
11
33
1.68
21221--21269
22
2.3
22
78
3
55
12
53
0
34
1.39
36641--36680
12
3.2
12
82
3
53
57
0
42
0
0.98
36649--36682
15
2.2
16
89
5
52
61
0
38
0
0.96
37212--37241
2
15.0
2
100
0
60
50
0
0
50
1.00
61609--61664
28
2.0
28
100
0
112
32
32
17
17
1.94
71535--71605
32
2.2
32
85
7
92
61
5
2
29
1.33
76518--76551
17
2.0
17
88
0
50
47
17
5
29
1.71
78301--78370
3
23.3
3
82
5
79
62
1
35
0
1.04
78300--78379
18
4.1
20
76
15
87
61
1
37
0
1.04
78772--78806
16
2.2
16
89
0
52
17
20
14
48
1.81

Tables:   1

The End!