Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014274.1 Corchorus olitorius cultivar O-4 contig14307, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100743

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4934--4989
27
2.1
27
82
0
67
17
46
14
21
1.84
8307--8338
14
2.3
14
100
0
64
37
0
21
40
1.54
8598--8648
26
2.0
26
100
0
102
35
11
9
43
1.75
9062--9099
17
2.2
17
90
4
58
81
0
18
0
0.69
9064--9097
12
2.8
12
90
4
50
85
0
14
0
0.60
17625--17683
19
3.0
19
73
9
64
35
18
10
35
1.85
24982--25015
11
3.2
11
87
4
52
91
0
8
0
0.43
26591--26631
21
2.0
21
90
0
64
29
9
19
41
1.83
30532--30564
17
1.9
17
88
11
50
48
6
12
33
1.65
31263--31314
19
2.9
17
81
18
61
26
1
0
71
0.97
34196--34232
2
18.5
2
100
0
74
48
0
0
51
1.00
43110--43147
20
1.9
20
94
0
67
18
18
5
57
1.58
43642--44281
91
7.0
92
88
2
871
42
11
14
32
1.81
43642--44379
183
4.0
184
87
4
936
41
11
14
32
1.81
43642--44281
274
2.3
272
87
3
910
42
11
14
32
1.81
44039--44398
48
7.7
47
72
12
285
39
10
16
33
1.83
47489--47549
30
2.0
30
96
0
113
31
14
22
31
1.94
58140--58187
26
1.9
24
91
8
78
43
14
0
41
1.45
63278--63329
26
2.0
26
100
0
104
34
15
3
46
1.64
64111--64145
2
17.5
2
100
0
70
48
0
0
51
1.00
79796--79986
104
1.8
105
91
2
321
48
6
5
39
1.54
82114--82192
39
2.0
39
97
0
149
31
10
20
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88430--88470
21
2.0
21
85
0
55
31
4
39
24
1.76
88466--88512
12
3.9
12
82
0
58
29
0
53
17
1.44
88466--88515
24
2.1
24
88
7
75
30
0
52
18
1.46
88481--88519
6
6.5
6
81
0
51
30
0
51
17
1.46
95719--100739
332
15.2
327
81
6
3889
35
16
15
32
1.90
98061--100741
333
8.1
332
87
2
3523
35
16
15
32
1.91

Tables:   1

The End!