Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014275.1 Corchorus olitorius cultivar O-4 contig14308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77586

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2559
334
7.7
332
88
2
3642
34
16
15
32
1.91
2967--2995
14
2.0
15
93
6
51
55
10
20
13
1.68
4147--4323
52
3.4
52
95
3
304
28
22
15
33
1.95
6625--6694
32
2.4
27
77
20
86
37
15
20
27
1.93
6633--6694
32
1.9
32
96
0
115
37
17
17
27
1.93
11024--11087
21
3.2
20
82
8
76
35
9
21
32
1.86
11030--11087
19
2.9
19
84
5
71
36
8
22
32
1.85
14225--14252
3
9.3
3
100
0
56
64
0
0
35
0.94
22707--22961
133
2.0
123
89
7
384
37
10
1
49
1.49
22948--22986
14
2.9
13
80
3
51
41
2
2
53
1.28
40572--40632
24
2.6
23
84
5
86
22
26
19
31
1.98
42772--42819
24
2.0
24
91
0
78
16
31
20
31
1.95
43916--43959
12
3.8
12
77
22
58
31
29
0
38
1.58
51639--51675
15
2.4
16
90
4
58
56
2
5
35
1.36
54575--54728
77
2.0
77
94
0
272
22
14
20
42
1.89
62261--62395
45
3.0
45
100
0
270
37
13
28
20
1.90
63058--63171
33
3.5
33
98
0
219
39
14
30
15
1.87
63170--63219
24
2.1
24
92
0
82
38
8
40
14
1.75
64780--64823
17
2.6
16
82
10
52
84
2
13
0
0.73
64795--64823
15
1.9
15
100
0
58
82
3
13
0
0.79
67008--67038
16
1.9
16
93
0
53
0
35
0
64
0.94

Tables:   1

The End!