Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014278.1 Corchorus olitorius cultivar O-4 contig14311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148894

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--75
33
2.3
33
95
0
132
14
32
36
17
1.90
202--282
33
2.5
33
93
0
135
17
34
33
14
1.90
199--293
33
2.9
33
88
3
129
16
34
33
14
1.90
3559--3602
21
2.1
21
95
0
79
15
22
11
50
1.76
3633--3663
12
2.6
12
94
0
53
0
19
32
48
1.49
3772--3798
5
5.4
5
100
0
54
40
37
22
0
1.54
3878--3907
2
15.0
2
100
0
60
50
0
0
50
1.00
4178--4260
42
2.0
43
85
7
116
36
22
18
22
1.95
4233--4277
21
2.4
19
85
14
58
46
26
17
8
1.78
12463--12547
38
2.2
37
85
4
107
29
21
31
17
1.96
12463--12570
37
2.9
38
83
4
139
25
20
33
20
1.97
29725--29816
46
2.0
46
100
0
184
45
13
15
26
1.82
33535--33585
9
6.0
8
82
15
50
3
11
0
84
0.75
33529--33576
20
2.3
20
89
10
71
2
10
0
87
0.62
33534--33568
9
3.9
9
100
0
70
0
8
0
91
0.42
33538--33584
18
2.6
18
86
6
60
4
10
0
85
0.74
33532--33570
1
39.0
1
84
0
51
0
7
0
92
0.39
33529--33584
29
1.9
29
85
7
78
3
10
0
85
0.71
42446--42480
16
2.2
16
89
0
52
74
2
8
14
1.17
48814--48853
20
2.0
20
100
0
80
35
25
20
20
1.96
57823--57868
18
2.5
20
77
22
55
58
4
6
30
1.43
57971--58111
49
3.0
47
85
8
178
51
5
14
27
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60715--60741
3
9.0
3
100
0
54
66
0
33
0
0.92
60950--60994
10
4.8
10
81
13
60
80
0
0
20
0.72
60952--60994
18
2.5
18
85
7
63
79
0
0
20
0.74
63813--63838
8
3.2
8
100
0
52
26
0
23
50
1.50
65146--65235
38
2.4
38
92
0
144
33
11
11
44
1.75
65865--65936
37
1.9
37
100
0
144
6
19
19
54
1.67
65976--66036
30
2.0
31
90
6
97
32
16
8
42
1.78
66238--66331
47
2.0
47
97
0
179
31
19
13
35
1.91
80262--80300
17
2.2
18
90
4
62
51
15
10
23
1.73
80325--80372
23
2.2
22
88
7
71
52
18
10
18
1.74
80591--80672
39
2.1
39
90
2
130
46
8
9
35
1.68
80742--80768
13
2.1
13
100
0
54
29
7
22
40
1.81
85950--85992
2
22.0
2
95
4
79
48
0
0
51
1.00
86338--86374
19
2.0
19
94
5
67
67
0
0
32
0.91
89848--89880
5
6.6
5
96
0
57
54
0
0
45
0.99
90416--90444
4
7.2
4
100
0
58
75
0
0
24
0.80
98454--98501
6
7.8
6
86
13
71
81
0
0
18
0.70
102307--102360
19
3.2
17
82
14
67
22
16
7
53
1.67
102323--102360
19
2.0
19
100
0
76
26
15
5
52
1.64
102895--103000
36
2.9
36
98
0
203
16
47
16
19
1.83
103155--103284
30
4.3
30
97
0
242
20
53
2
24
1.57
103289--103360
30
2.4
30
95
0
135
15
50
6
27
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103514--103642
57
2.3
57
83
0
168
18
37
17
26
1.93
103668--104205
288
1.9
288
90
1
864
20
30
14
34
1.93
108143--108172
15
2.0
15
93
0
51
6
50
0
43
1.28
138245--138290
22
2.1
22
88
8
67
30
21
23
23
1.99
144054--144085
2
17.0
2
87
12
50
50
0
0
50
1.00

Tables:   1

The End!