Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014281.1 Corchorus olitorius cultivar O-4 contig14314, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11296
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:670 original size:2 final size:2

Alignment explanation


    Indices: 663--692  Score: 60
    Period size: 2  Copynumber: 15.0  Consensus size: 2

        653 GTTTAACTAG

                                                        
        663 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        693 AATGAAATTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1484 original size:27 final size:27

Alignment explanation


    Indices: 1431--1484  Score: 72
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1421 GTTATAATAT

                                * *    
       1431 AATTGTATAAAAGTGCAATTTAGTTAG
          1 AATTGTATAAAAGTGCAATTGAATTAG

                    **                 
       1458 AATTGTATGCAAGTGCAATTGAATTAG
          1 AATTGTATAAAAGTGCAATTGAATTAG

       1485 TAGTACAGGC


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   23  1.00

ACGTcount: A:0.39, C:0.06, G:0.20, T:0.35


Consensus pattern (27 bp):   
AATTGTATAAAAGTGCAATTGAATTAG
Done.