Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014287.1 Corchorus olitorius cultivar O-4 contig14320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40554

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
288--312
8
3.1
8
100
0
50
36
12
0
52
1.39
279--312
16
2.1
16
88
5
50
35
17
0
47
1.48
2505--2531
4
6.8
4
100
0
54
51
0
0
48
1.00
9017--9050
2
17.0
2
100
0
68
50
0
0
50
1.00
25437--25475
21
1.9
21
89
5
62
25
12
12
48
1.77
27927--27952
9
2.9
9
100
0
52
23
11
23
42
1.86
28277--28304
13
2.2
13
100
0
56
42
28
0
28
1.56
37150--37315
81
2.0
82
98
1
325
27
16
19
36
1.93
39195--39563
186
2.0
183
97
1
702
27
15
17
39
1.90
39864--39893
2
15.0
2
100
0
60
50
0
0
50
1.00
40243--40346
48
2.2
47
86
6
147
51
3
19
25
1.63

Tables:   1

The End!