Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014288.1 Corchorus olitorius cultivar O-4 contig14321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25136

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2246--2290
15
3.0
15
75
12
56
11
28
24
35
1.90
2228--2290
30
2.1
30
84
0
81
15
23
23
36
1.94
3519--3578
18
3.3
18
92
0
93
8
23
40
28
1.83
3510--3579
18
3.9
18
90
0
86
10
22
38
28
1.87
3981--4272
159
1.8
158
90
2
433
39
16
23
19
1.92
5134--5159
11
2.4
11
100
0
52
7
15
7
69
1.35
7046--7124
18
4.4
18
95
0
131
11
22
36
29
1.89
7037--7124
36
2.4
36
90
0
140
11
22
36
29
1.89
7526--7924
159
2.5
159
90
0
618
40
17
21
20
1.91
10782--10810
15
1.9
15
100
0
58
48
6
13
31
1.69
12754--12792
16
2.5
16
91
4
62
53
5
0
41
1.23
12763--12817
25
2.2
26
81
12
71
49
5
0
45
1.25
15649--15686
19
2.0
20
85
15
53
28
5
2
63
1.30
15853--16028
22
7.9
22
72
12
108
35
9
17
38
1.82
16068--16127
22
2.7
22
80
10
68
38
10
16
35
1.82
16064--16201
74
1.9
74
84
3
188
34
7
20
37
1.80
16142--16201
22
2.7
23
75
10
72
30
6
13
50
1.67
16184--16492
22
13.9
21
67
18
96
41
9
15
33
1.79
16587--16856
126
2.1
129
80
4
287
40
8
15
34
1.79
16911--17040
45
2.9
45
80
7
122
34
10
16
37
1.84
16573--17049
22
22.0
22
70
11
229
38
9
16
35
1.82
17483--17549
31
2.2
31
82
10
77
43
23
10
22
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18590--18619
16
1.9
15
93
6
51
73
0
23
3
0.98
20584--20811
22
10.6
22
72
12
143
39
17
10
32
1.83
20584--20727
66
2.2
66
84
1
180
40
15
11
32
1.83
20583--20727
44
3.3
44
80
0
173
40
15
11
32
1.84
20755--20811
21
2.6
22
86
8
73
38
22
7
31
1.81
20830--20936
22
4.9
22
74
4
99
29
22
10
37
1.87
21067--21167
22
4.6
22
77
0
103
33
12
12
40
1.82
21067--21191
66
1.9
66
83
3
162
34
13
12
40
1.82
21041--21147
44
2.4
44
84
0
124
35
13
11
40
1.80
24033--24063
11
2.8
11
95
0
53
0
3
19
77
0.90

Tables:   1

The End!