Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014292.1 Corchorus olitorius cultivar O-4 contig14325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64280

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
746--1159
204
2.0
205
98
1
796
43
8
11
36
1.71
1269--1349
39
2.0
40
92
2
137
37
3
8
50
1.51
2586--2624
20
2.0
20
85
10
53
28
5
2
64
1.28
2787--2971
66
2.8
66
82
6
196
33
10
19
36
1.87
2791--3023
22
10.5
22
72
9
143
36
10
17
36
1.84
3029--3814
44
18.3
43
66
15
265
39
9
16
35
1.81
3029--3419
22
17.7
21
71
16
154
39
10
15
34
1.82
3280--3439
87
1.8
87
83
2
214
41
10
13
35
1.77
3541--3623
43
1.9
44
90
7
134
39
9
12
38
1.75
3541--3601
21
2.8
22
80
5
70
39
9
11
39
1.75
3539--3814
22
12.8
22
70
13
101
40
8
15
35
1.78
3690--3795
23
4.8
22
82
5
106
36
8
16
37
1.80
3779--3834
22
2.5
22
77
13
60
33
14
12
39
1.83
3934--4005
22
3.3
21
73
11
65
40
13
16
29
1.87
8344--8392
22
2.2
22
85
7
64
42
10
22
24
1.84
8357--8432
22
3.4
22
82
7
82
38
10
17
34
1.84
10386--10483
22
4.4
22
77
7
90
38
11
11
38
1.77
11038--11476
22
19.5
22
68
13
180
36
11
15
36
1.85
11724--11778
22
2.5
22
90
0
83
38
7
10
43
1.68
12859--12891
2
16.5
2
100
0
66
48
0
0
51
1.00
13106--13208
51
2.0
51
96
0
188
21
1
27
49
1.60
13976--14008
15
2.1
17
88
11
52
63
6
0
30
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15297--15341
20
2.2
20
84
7
56
15
37
2
44
1.59
15765--15836
31
2.3
31
75
13
76
27
4
6
61
1.41
16486--16543
16
3.6
16
72
9
64
41
41
12
5
1.64
16532--16573
16
2.6
16
84
0
57
35
40
14
9
1.78
16486--16556
32
2.2
32
82
5
90
39
40
12
7
1.70
23688--23720
15
2.2
15
94
0
57
30
15
21
33
1.94
25483--25545
29
2.3
27
82
17
76
44
7
1
46
1.42
28248--28415
22
7.7
22
70
13
100
40
8
13
37
1.75
28317--28415
43
2.3
44
83
1
119
38
9
12
40
1.74
28482--28511
2
15.5
2
93
6
53
50
0
0
50
1.00
29439--29667
22
10.4
22
72
8
144
42
8
13
34
1.75
29455--30041
44
13.3
45
66
18
193
38
8
15
36
1.79
29526--29692
88
1.9
88
85
4
230
41
9
13
35
1.77
29707--30041
22
15.7
21
69
15
154
37
8
16
37
1.79
29917--30041
23
5.5
23
80
5
103
37
8
15
38
1.78
30008--30054
22
2.1
22
84
0
58
36
8
12
42
1.74
30085--30144
22
2.7
22
75
12
59
30
11
18
40
1.86
30212--30252
22
1.9
21
85
5
55
48
2
12
36
1.54
49124--49364
107
2.2
109
83
4
299
41
11
9
38
1.73
63282--63331
26
1.9
26
88
8
75
50
6
2
42
1.38

Tables:   1

The End!