Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014295.1 Corchorus olitorius cultivar O-4 contig14328, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5757
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33


Found at i:3416 original size:27 final size:27

Alignment explanation


    Indices: 3386--3446  Score: 88
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       3376 AAAAAATCTC

                        *               
       3386 TTATATTTTTTTGGACAAA-ATAATCCT
          1 TTATATTTTTTTAGACAAATA-AATCCT

                *                      
       3413 TTATGTTTTTTTAGACAAATAAATCCT
          1 TTATATTTTTTTAGACAAATAAATCCT

                   
       3440 TTATATT
          1 TTATATT

       3447 ATAAAAAGTG


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  27   29  0.97
  28    1  0.03

ACGTcount: A:0.33, C:0.10, G:0.07, T:0.51


Consensus pattern (27 bp):   
TTATATTTTTTTAGACAAATAAATCCT

Found at i:3924 original size:22 final size:22

Alignment explanation


    Indices: 3899--3942  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3889 ATCCTAGCCC

                                  
       3899 GAAAATGTTTAAATATTTTCTT
          1 GAAAATGTTTAAATATTTTCTT

                                  
       3921 GAAAATGTTTAAATATTTTCTT
          1 GAAAATGTTTAAATATTTTCTT

       3943 TTGGTATGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50


Consensus pattern (22 bp):   
GAAAATGTTTAAATATTTTCTT
Done.