genome.fa.s14300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014300.1 Corchorus olitorius cultivar O-4 contig14333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72703

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1714--1746	13	2.7	12	90	9	57	66	3	30	0	1.06
3617--3651	14	2.5	14	100	0	70	31	20	34	14	1.92
4659--4688	7	4.3	7	100	0	60	60	13	26	0	1.34
7914--7947	16	2.1	16	94	0	59	35	17	17	29	1.93
25333--25367	4	8.5	4	93	6	61	0	22	0	77	0.78
25336--25379	8	5.5	8	86	10	54	0	18	0	81	0.68
34280--34381	29	3.4	29	68	15	91	32	21	18	27	1.97
34249--34409	60	2.7	60	91	0	250	35	19	18	27	1.94
34245--34409	31	5.5	30	67	16	99	34	19	18	27	1.95
34457--34615	60	2.6	59	87	3	203	28	14	17	38	1.89
34515--34618	31	3.4	30	71	10	104	28	17	17	36	1.92
35329--35377	19	2.5	20	86	6	64	30	22	12	34	1.91
36233--36262	2	15.0	2	100	0	60	50	0	0	50	1.00
45161--45238	31	2.5	32	85	2	113	25	30	26	16	1.97
47114--47143	9	3.2	9	90	9	51	50	10	40	0	1.36
47113--47143	10	3.2	10	90	9	55	51	9	38	0	1.35
54945--55023	39	2.0	39	100	0	158	31	30	12	25	1.93
56227--56331	52	2.0	52	90	0	165	23	10	16	49	1.76
60151--60253	31	3.4	30	79	12	104	33	13	25	28	1.94
61320--61386	33	2.0	33	100	0	134	35	2	8	52	1.48
62064--62096	15	2.1	16	88	5	50	45	6	3	45	1.43
63156--63190	11	3.2	11	91	0	61	0	2	17	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63752--63916	18	8.6	18	77	12	141	41	0	56	1	1.11
63810--63978	3	56.7	3	77	8	103	38	0	60	0	1.06
63785--63978	41	4.7	41	75	8	101	38	0	59	1	1.08
63752--63882	9	15.0	9	71	4	81	43	0	54	0	1.10
63762--63978	18	11.9	18	74	12	117	39	0	58	0	1.10
64803--64849	14	3.4	14	75	13	53	48	23	10	17	1.77
67559--68771	332	3.6	329	83	4	1522	33	14	16	35	1.89
68561--68986	215	2.0	211	82	3	523	30	17	16	35	1.92
67896--69654	882	2.0	877	84	4	2299	33	15	16	35	1.89
68772--72446	333	11.0	334	87	3	4920	34	14	16	34	1.89
68772--72446	668	5.5	668	86	4	4862	34	14	16	34	1.89

Tables:   1

The End!